Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f01
         (219 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   0.24 
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              20   3.0  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              20   3.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    19   5.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    19   6.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   6.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   6.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   6.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   9.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   9.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   9.2  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 0.24
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
 Frame = +3

Query: 6   HFFHSNR--ISWNSCNN-WN 56
           +FF S R  + W SCNN WN
Sbjct: 87  YFFMSMRSELPWGSCNNYWN 106


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 3.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 159 CSMIISLHFYLLMRKLIK 212
           CS+I   + Y+   KL+K
Sbjct: 104 CSVISDANIYIRFNKLVK 121


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 3.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 159 CSMIISLHFYLLMRKLIK 212
           CS+I   + Y+   KL+K
Sbjct: 104 CSVISDANIYIRFNKLVK 121


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 91  NNHFSKNHH 117
           NNH++ NH+
Sbjct: 422 NNHYNHNHN 430


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 22  TGFHGIHVIIG 54
           TG HG+H + G
Sbjct: 132 TGLHGLHGLHG 142


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +3

Query: 30  SWNSCNNW 53
           SWN  N+W
Sbjct: 695 SWNKWNDW 702


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +3

Query: 30  SWNSCNNW 53
           SWN  N+W
Sbjct: 695 SWNKWNDW 702


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +3

Query: 30  SWNSCNNW 53
           SWN  N+W
Sbjct: 695 SWNKWNDW 702


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 170 YFFTFLFIDEEIN 208
           Y+ T+LF +EE N
Sbjct: 434 YWSTYLFREEEQN 446


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 170 YFFTFLFIDEEIN 208
           Y+ T+LF +EE N
Sbjct: 434 YWSTYLFREEEQN 446


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 170 NHTTSTKCQY 141
           N T STKC Y
Sbjct: 628 NVTLSTKCPY 637


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,370
Number of Sequences: 438
Number of extensions: 591
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3281070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)