Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13e23
         (182 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81055-11|CAB02899.2|  384|Caenorhabditis elegans Hypothetical p...    25   7.1  
AL022716-6|CAA18774.2|  384|Caenorhabditis elegans Hypothetical ...    25   7.1  
AJ561205-1|CAE47483.1|   73|Caenorhabditis elegans NAS-12 protein.     25   7.1  
Z92827-5|CAB07325.1|  732|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z69902-7|CAA93769.1|  618|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AB023424-1|BAA82800.1|  618|Caenorhabditis elegans kel-1 protein.      25   9.4  

>Z81055-11|CAB02899.2|  384|Caenorhabditis elegans Hypothetical
           protein C24F3.3 protein.
          Length = 384

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 36  NKYFEAFIINSCKRE*RLCQY 98
           N +++  +I SC++  RLC Y
Sbjct: 307 NPFYKQMMIKSCQKTCRLCSY 327


>AL022716-6|CAA18774.2|  384|Caenorhabditis elegans Hypothetical
           protein C24F3.3 protein.
          Length = 384

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 36  NKYFEAFIINSCKRE*RLCQY 98
           N +++  +I SC++  RLC Y
Sbjct: 307 NPFYKQMMIKSCQKTCRLCSY 327


>AJ561205-1|CAE47483.1|   73|Caenorhabditis elegans NAS-12
          protein.
          Length = 73

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 36 NKYFEAFIINSCKRE*RLCQY 98
          N +++  +I SC++  RLC Y
Sbjct: 29 NPFYKQMMIKSCQKTCRLCSY 49


>Z92827-5|CAB07325.1|  732|Caenorhabditis elegans Hypothetical
           protein C29F7.6 protein.
          Length = 732

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 176 FYVIK*YLFHSIHLSPNKIDQNNKRKIL 93
           FYV +  + H+IHL P   ++  K KIL
Sbjct: 101 FYVAQ-CMAHNIHLLPENTNKETKLKIL 127


>Z69902-7|CAA93769.1|  618|Caenorhabditis elegans Hypothetical
           protein C47D12.7 protein.
          Length = 618

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 125 KIDQNNKRKIL-TQSLFSLTTVYDKC 51
           +ID+ N + IL T SL  LT V D C
Sbjct: 135 RIDEQNVQTILATASLLQLTCVRDAC 160


>AB023424-1|BAA82800.1|  618|Caenorhabditis elegans kel-1 protein.
          Length = 618

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 125 KIDQNNKRKIL-TQSLFSLTTVYDKC 51
           +ID+ N + IL T SL  LT V D C
Sbjct: 135 RIDEQNVQTILATASLLQLTCVRDAC 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,806,531
Number of Sequences: 27780
Number of extensions: 57517
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 12,740,198
effective HSP length: 41
effective length of database: 11,601,218
effective search space used: 220423142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)