Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13e23
         (182 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   0.44 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   1.8  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    20   2.4  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    20   2.4  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    20   2.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    19   5.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   5.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   7.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    18   9.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    18   9.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    18   9.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 0.44
 Identities = 6/25 (24%), Positives = 19/25 (76%)
 Frame = -1

Query: 146 SIHLSPNKIDQNNKRKILTQSLFSL 72
           ++ +SPN++  N+K +++ Q+ +++
Sbjct: 472 NMQISPNELKPNDKSQVIKQNTWTV 496


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 137 LSPNKIDQNNKRKIL 93
           LSP  ID  N++KIL
Sbjct: 47  LSPFNIDTPNRQKIL 61


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 117 SE*QKKNIDTIFIL 76
           S+ ++KN+DT+ +L
Sbjct: 28  SKEERKNVDTVLVL 41


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 117 SE*QKKNIDTIFIL 76
           S+ ++KN+DT+ +L
Sbjct: 28  SKEERKNVDTVLVL 41


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 117 SE*QKKNIDTIFIL 76
           S+ ++KN+DT+ +L
Sbjct: 28  SKEERKNVDTVLVL 41


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 175 FML*NNIYFILFI 137
           FML N IY+I ++
Sbjct: 476 FMLFNAIYWIFYV 488


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 143  IHLSPNKIDQNNKRKILTQSLFS 75
            I  SP++  Q  ++KIL + L S
Sbjct: 1098 IQQSPHQQQQQQQQKILAKVLTS 1120


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 4/13 (30%), Positives = 10/13 (76%)
 Frame = +2

Query: 86  IVSIFFFCYSDLF 124
           I+++FF C++  +
Sbjct: 265 IIAVFFICWTPYY 277


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/34 (17%), Positives = 16/34 (47%)
 Frame = +3

Query: 27  WKGNKYFEAFIINSCKRE*RLCQYFSFVILIYFI 128
           W G+  + +  + SC++  ++  +    +  Y I
Sbjct: 262 WLGSGQYISDFVGSCRKTDQILYFIRGCLQTYLI 295


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/34 (17%), Positives = 16/34 (47%)
 Frame = +3

Query: 27  WKGNKYFEAFIINSCKRE*RLCQYFSFVILIYFI 128
           W G+  + +  + SC++  ++  +    +  Y I
Sbjct: 300 WLGSGQYISDFVGSCRKTDQILYFIRGCLQTYLI 333


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 3   VLF*MYFFWKGNKYFEAFIINS 68
           VL  +YF  K +KY E  I+ +
Sbjct: 78  VLNVLYFINKNDKYEENTILTT 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,449
Number of Sequences: 438
Number of extensions: 594
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used:  2576460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)