Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13e22
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 61 5e-10
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 60 9e-10
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 58 5e-09
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 49 3e-06
11_01_0557 + 4394754-4396040 48 7e-06
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 46 3e-05
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 30 1.5
05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419 28 6.2
01_05_0726 - 24630080-24630778,24630899-24631011,24631088-246311... 27 8.2
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 61.3 bits (142), Expect = 5e-10
Identities = 27/67 (40%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = +1
Query: 376 NGTVSLKPYAI-FDWSESTQGLILSGFYYGYAITHVPGGYLAEKYGGKWTLGIGLLSTAI 552
N ++++ P + F WS +T GLI S F++GY +T + GG A+++GGK LG G++ +I
Sbjct: 201 NMSIAILPMSSEFGWSPATVGLIQSSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWSI 260
Query: 553 FTLMTPV 573
T++TP+
Sbjct: 261 ATVLTPL 267
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 60.5 bits (140), Expect = 9e-10
Identities = 23/56 (41%), Positives = 41/56 (73%)
Frame = +1
Query: 409 FDWSESTQGLILSGFYYGYAITHVPGGYLAEKYGGKWTLGIGLLSTAIFTLMTPVV 576
+ W+ ST GL+ S F++GYA++ +PGG+LA+ +GG+ L IG+++ ++ T + P V
Sbjct: 163 YGWNSSTAGLVQSSFFWGYALSQLPGGWLAKLFGGRRVLEIGVVAWSLATAIIPAV 218
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 58.0 bits (134), Expect = 5e-09
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +1
Query: 376 NGTVSLKPY-AIFDWSESTQGLILSGFYYGYAITHVPGGYLAEKYGGKWTLGIGLLSTAI 552
N ++++ P A F W+ T GLI S F++GY +T + GG A+ GGK LG G++ +I
Sbjct: 139 NMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIAGGIWADTVGGKTVLGFGVIWWSI 198
Query: 553 FTLMTP 570
T +TP
Sbjct: 199 ATALTP 204
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 382 TVSLKPYAI-FDWSESTQGLILSGFYYGYAITHVPGGYLAEKYGGKWTLGIGLLSTAIFT 558
+V++ P+A + WS S G++ S F +GY + + GG LA++YGGK + ++ T
Sbjct: 144 SVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMVGGALADRYGGKKVMAGAAALWSLAT 203
Query: 559 LMTP 570
+TP
Sbjct: 204 FLTP 207
>11_01_0557 + 4394754-4396040
Length = 428
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/53 (39%), Positives = 37/53 (69%)
Frame = +1
Query: 418 SESTQGLILSGFYYGYAITHVPGGYLAEKYGGKWTLGIGLLSTAIFTLMTPVV 576
+++ +G+ILS FYYGY ++ +PGG+ A++ GG+ L LLS +++ + VV
Sbjct: 41 NQANKGMILSMFYYGYVLSQIPGGWAAQRLGGRLVL---LLSFVLWSSICAVV 90
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +1
Query: 349 CPDDSEILTNGTVSLKPYAIFDWSESTQGLILSGFYYGYAITHVPGGYLAEKYGGKWTLG 528
C D +++ V L + W+ S G++ S F +GY ++ + GG L + YGGK +
Sbjct: 111 CNADRVVMSVAIVPLSQ--AYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMA 168
Query: 529 IGLLSTAIFTLMTP 570
G+ ++ T ++P
Sbjct: 169 YGVALWSLATFLSP 182
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 204 EQSRYSFPPSWYHFSVLVTLACYFITFCIVGLK 106
E+ F PSWYH V+ L F+T +V K
Sbjct: 155 EEDEPFFDPSWYHLQVVYELLLRFVTSPMVDAK 187
>05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419
Length = 528
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 186 FPPSWYHFSVLVTLACYFITFCIVGLKLFLK 94
F PSWYH + L F+ +V +K+ K
Sbjct: 192 FDPSWYHLQAVYELLLRFVMSPVVDVKIARK 222
>01_05_0726 -
24630080-24630778,24630899-24631011,24631088-24631169,
24631248-24631337,24631412-24631469,24631661-24631756,
24631835-24631908,24632006-24632068,24634111-24634320,
24634869-24635048
Length = 554
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 539 RRPIPKVHFPPYFSAKYPPGT 477
R P+P FP Y ++PPGT
Sbjct: 509 RPPMPPQQFPMYGDQQFPPGT 529
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,244,989
Number of Sequences: 37544
Number of extensions: 336190
Number of successful extensions: 845
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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