Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13e20
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   6.0  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.9  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 209 VLGVTPKATQNDIKTAYYKL 268
           +LG  P+AT  DIK   Y +
Sbjct: 175 LLGCFPRATNRDIKKCSYNM 194


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 458 LKFYKSHATRNITPTMDGKVPIYDFDSWS---KHHYSDVFAKQKYDKEMVR 601
           L+ ++ H    I       V + DF+SW    + +++ +   +K   E+VR
Sbjct: 120 LQVFRDHLINQIPDKSFPGVGVIDFESWRPIFRQNWASLQPYKKLSVEVVR 170


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 332 TEAYEVLGNIQLKKMYDRGLLVGRENTSRMEYKPEPEPTDPTL 460
           TEA+EV     L K + + L +    T  + +  E E T+P L
Sbjct: 79  TEAFEVDLEFYLGKEWKKNLNLRDSVTKYLIHLKEIEDTEPIL 121


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 419 YEKYSLYQLRDLYHTF 372
           YE+Y +Y+L +L  +F
Sbjct: 406 YEEYKMYELGELASSF 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,563
Number of Sequences: 438
Number of extensions: 4563
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)