Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13e18
(389 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2... 29 0.25
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 27 0.77
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 27 1.4
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 26 1.8
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 3.1
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 24 7.2
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 24 7.2
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 24 7.2
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 24 9.5
>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 29.1 bits (62), Expect = 0.25
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 370 DSLRLVVEGRDIRVEEAAARLSLEDG 293
+SLR +V+G IR ++ A L +EDG
Sbjct: 74 NSLRFLVDGERIRPDQTPAELDMEDG 99
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 27.5 bits (58), Expect = 0.77
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 131 GGWVSVFHSTVGIVTCV 181
G W S+ HSTV ++TC+
Sbjct: 104 GTWFSIGHSTVVLITCI 120
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 112 VIKPNNRRMGLCFSFDCGDCDLCVNPCCLALSAC 213
VI PNN R+G+ + C D+ C ++ C
Sbjct: 221 VIHPNNARLGILHTLGCVPVDVMPIDCQVSCMEC 254
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = -2
Query: 238 SDTDTESDNKRSMLNSRGLHTGHNPHSRMKNRDPSS 131
S+ + +++K + LN G++ G NP+SR+ ++PSS
Sbjct: 106 SEESSSTESKFATLND-GINGG-NPYSRLYRKNPSS 139
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 3.1
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 246 TGVRTQTRNQTTSAQC*TAGVYTQVTIPT 160
T T T QTT+ TAG TQVT T
Sbjct: 1362 TQATTATEVQTTTGATGTAGTETQVTTAT 1390
Score = 24.2 bits (50), Expect = 7.2
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 246 TGVRTQTRNQTTSAQC*TAGVYTQVTIPT 160
T V T T Q T+ TAG TQVT T
Sbjct: 1242 TQVTTATEVQPTTGATGTAGTETQVTTGT 1270
Score = 24.2 bits (50), Expect = 7.2
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 246 TGVRTQTRNQTTSAQC*TAGVYTQVTIPT 160
T V T T Q T+ TAG TQVT T
Sbjct: 1324 TQVTTATEVQPTTGATGTAGTETQVTTGT 1352
Score = 23.8 bits (49), Expect = 9.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 246 TGVRTQTRNQTTSAQC*TAGVYTQVTIPT 160
T T T QTT+ TAG TQ T T
Sbjct: 1198 TQATTATEVQTTTGATGTAGTETQATTAT 1226
Score = 23.8 bits (49), Expect = 9.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 246 TGVRTQTRNQTTSAQC*TAGVYTQVTIPT 160
T T T QTT+ TAG TQ T T
Sbjct: 1280 TQATTATEVQTTTGATGTAGTETQATTAT 1308
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 31 FSSYCDINREG*NWCHVLLFI 93
FS Y D+NR +W H L FI
Sbjct: 1153 FSRYGDLNRINDDWKHSLDFI 1173
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 179 HRSQSPQSNEKQRPILLLFGFITVMKYFKINNKTW 75
H SP + + LL G ITV + INN+T+
Sbjct: 237 HSQPSPNLSSEIGFSLLRPGLITVKSVYAINNQTF 271
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 24.2 bits (50), Expect = 7.2
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 337 IRVEEAAARLSLEDGARGWSXXXXXXXXXAHRRSDTDTES 218
I V EAAA + L D + W A R S TD S
Sbjct: 754 ITVFEAAANIVLPDNGQSWQKLRSGDLSDAPRLSSTDNGS 793
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 23.8 bits (49), Expect = 9.5
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 80 TWHQFQPSRLISQYEENC 27
++HQFQ R+ +++E C
Sbjct: 228 SYHQFQVQRVYDEWKEEC 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,391,894
Number of Sequences: 5004
Number of extensions: 25735
Number of successful extensions: 78
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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