Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13e17
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-6|AAA91266.1|  470|Caenorhabditis elegans Vacuolar h atpa...   103   9e-23
U41109-12|AAB37043.1|  451|Caenorhabditis elegans Hypothetical p...    74   6e-14
U64849-2|AAC48051.1|  411|Caenorhabditis elegans Hypothetical pr...    31   0.73 
Z83226-1|CAB05724.2|  252|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    27   6.8  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    27   6.8  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    27   6.8  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      27   6.8  
Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U50199-6|AAA91266.1|  470|Caenorhabditis elegans Vacuolar h atpase
           protein 15 protein.
          Length = 470

 Score =  103 bits (247), Expect = 9e-23
 Identities = 51/130 (39%), Positives = 79/130 (60%), Gaps = 8/130 (6%)
 Frame = +1

Query: 172 IDMIAATSVLQIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQKDLPDK----- 336
           +DM+ ATS LQ+ A E+R  + NW SY +SQMI + D++FI + +    K+  D+     
Sbjct: 12  VDMLNATSRLQLEAQELRNNKPNWGSYFRSQMIQEDDYNFITSFENAKSKEERDQVLAAN 71

Query: 337 NPDA-CAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRE--TKFSGNVWQPFL 507
           N +   A+   NL+T ++KD  ++Y+L L DD+L EDKSRV++F     +    VW  +L
Sbjct: 72  NANGQAAKTMANLITQVAKDQNVRYVLTLFDDMLQEDKSRVELFHSAAARQKRTVWSQYL 131

Query: 508 NLLNRQDEFV 537
            +L RQD F+
Sbjct: 132 GILQRQDNFI 141


>U41109-12|AAB37043.1|  451|Caenorhabditis elegans Hypothetical
           protein F52E1.10 protein.
          Length = 451

 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
 Frame = +1

Query: 202 QIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQK----DLPDKNPDACAEVFLN 369
           Q  A ++R  + NW  + +++MI Q D+DFIV   Q   +     +     +     F++
Sbjct: 15  QKEADKVRAMKTNWGLFTRTRMIAQSDYDFIVTYQQAENEAERSTVLSVFKEKAVYAFVH 74

Query: 370 LLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETK--FSGNVWQPFLNLLNRQDEFVQH 543
           L++ ISKD  ++Y L LIDD+L ED +R  IF +       + +  F+ LL+RQD+++ H
Sbjct: 75  LMSQISKDDYVRYTLTLIDDMLREDVTRTIIFEDVAVLLKRSPFSFFMGLLHRQDQYIVH 134

Query: 544 MT 549
           +T
Sbjct: 135 IT 136


>U64849-2|AAC48051.1|  411|Caenorhabditis elegans Hypothetical
           protein K04A8.5 protein.
          Length = 411

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 489 VAREFRLTKYLHPRFIFRKNVINEHKNVLNGVVLAD 382
           V   FR+  Y H  FI+  N  ++  NV+ G++L D
Sbjct: 373 VQGSFRIENYNHLHFIWGTNAASQVYNVITGIILQD 408


>Z83226-1|CAB05724.2|  252|Caenorhabditis elegans Hypothetical
           protein F43D2.1 protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +3

Query: 15  PEQCRIVCFSKKTQILKLFSVLEHLIDNIFG 107
           P++C+ VC +  T   +++S  ++L+D++ G
Sbjct: 91  PKKCKDVCQAAVTHYPEIYSKYQNLVDDVMG 121


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 19/64 (29%), Positives = 24/64 (37%)
 Frame = -3

Query: 505 GRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC*YASGG*ERLRHRHQDSCQA 326
           GR  K C      +   P+   Q +C+Q    C    G C    G      HR +  C A
Sbjct: 451 GRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKCQCDRGW---TGHRCEHHCPA 507

Query: 325 DLFG 314
           D FG
Sbjct: 508 DTFG 511


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 19/64 (29%), Positives = 24/64 (37%)
 Frame = -3

Query: 505 GRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC*YASGG*ERLRHRHQDSCQA 326
           GR  K C      +   P+   Q +C+Q    C    G C    G      HR +  C A
Sbjct: 451 GRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKCQCDRGW---TGHRCEHHCPA 507

Query: 325 DLFG 314
           D FG
Sbjct: 508 DTFG 511


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 19/64 (29%), Positives = 24/64 (37%)
 Frame = -3

Query: 505 GRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC*YASGG*ERLRHRHQDSCQA 326
           GR  K C      +   P+   Q +C+Q    C    G C    G      HR +  C A
Sbjct: 451 GRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKCQCDRGW---TGHRCEHHCPA 507

Query: 325 DLFG 314
           D FG
Sbjct: 508 DTFG 511


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 19/64 (29%), Positives = 24/64 (37%)
 Frame = -3

Query: 505 GRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC*YASGG*ERLRHRHQDSCQA 326
           GR  K C      +   P+   Q +C+Q    C    G C    G      HR +  C A
Sbjct: 451 GRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKCQCDRGW---TGHRCEHHCPA 507

Query: 325 DLFG 314
           D FG
Sbjct: 508 DTFG 511


>Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical
           protein F15D4.5 protein.
          Length = 491

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -3

Query: 496 AKRCQRISSHEISSPSIYLQKECHQ*AQ--ECIEWCG 392
           +++C+R+S+       +  QK+CHQ  +  E +E+CG
Sbjct: 383 SEQCRRVSTWFDRREKLTEQKKCHQCLEVYETVEFCG 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,210,354
Number of Sequences: 27780
Number of extensions: 233564
Number of successful extensions: 649
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)