Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13e16
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    33   0.055
SPBC216.06c |swi1||replication fork protection complex subunit S...    31   0.13 
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   6.3  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   8.3  
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    25   8.3  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 32.7 bits (71), Expect = 0.055
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 320 SIKARPAFIPDSSAHIPASMLAYTMQKHINADTPKTSP 207
           S KARP  +PD S+ +PAS + Y   K     +P  +P
Sbjct: 269 SAKARPVSVPDMSSPVPASSVEYESLKAAVTYSPSQNP 306


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = +1

Query: 418 GALMIFYIFLETYYQADVTPIETSIIIRLVWSFMMTKWGIMLYWTT--KKYLKTYNDHQL 591
           G +  F +FL+ Y   D   I  +I       F+  K  + LY     +   K +NDH  
Sbjct: 569 GCIDSFVLFLQCYQDLDSKQIHRAISF-FYRIFVKQKCHVYLYRLDFLRVLDKMFNDHVY 627

Query: 592 FSENPNIEET*FQAIQYYLNKLFSKMK 672
           FS   +  +   Q   YY+ KL   +K
Sbjct: 628 FSTTNSARQDFEQFFVYYMRKLSDALK 654


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 118 ISSLPPFLNFLSRSTLLKH 62
           IS+ PP +  L+RS+ LKH
Sbjct: 298 ISAAPPLIELLNRSSWLKH 316


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 315 NASLPLSEGISPCKLFEKKSSIHWRYWHYWLCG 413
           N +LPLS   S   L   K +  W+Y+ Y + G
Sbjct: 374 NLALPLSMDSSDVVLLCVKKAASWKYYKYTIDG 406


>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 2/128 (1%)
 Frame = +1

Query: 190 IALSSIGLVLGVSAFICFCIVYANIEAGMWALLSGINAG--LALMLHCHYLKESLHVNFS 363
           IA SSI  +LG             +  G W ++ GI  G  +A M + ++L++     F 
Sbjct: 53  IAASSIPPLLGQDPLALLIGAVWGLNVGFWTVVCGIFIGETIAFMAYRYFLEQKAQ-EFR 111

Query: 364 RKSLQYIGDIGIIGFVAGGALMIFYIFLETYYQADVTPIETSIIIRLVWSFMMTKWGIML 543
               ++ G    +  V  G+  + ++   ++     T +  + +  L +      W I  
Sbjct: 112 EHHEEHYGT--FVKIVEEGSYPLIWLIRLSFLPTHFTTVFFATLPELSY----IGWAIAF 165

Query: 544 YWTTKKYL 567
           + +  KYL
Sbjct: 166 WLSCFKYL 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,274
Number of Sequences: 5004
Number of extensions: 65217
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)