Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13e16
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1184 - 11251376-11251499,11251583-11251881                       32   0.40 
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    30   1.6  
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456...    28   8.6  
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    28   8.6  
04_03_1013 - 21714804-21714896,21715202-21715241,21715629-217156...    28   8.6  

>07_01_1184 - 11251376-11251499,11251583-11251881
          Length = 140

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 418 HQPQSQ*CQYLQCIEDFFSKSLHGEIPSDSGNEALKLGRHLFLTAVP 278
           + P ++  + L CI ++ +K++    P    NE + L R +FL+ VP
Sbjct: 50  NNPNARYVKQLLCIAEYLAKAMAKVCPGSRWNEDINLWRQIFLSNVP 96


>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
            725738-725840,726106-726264,726728-726846,726891-727004,
            727119-727277,727404-727451,728464-728640,729064-729116,
            729549-729661,729793-729873,729966-730081,730786-730905,
            732321-732429,732593-732770,732852-732920,733102-733233,
            733657-733766,733843-734003,734081-734171,734258-734355,
            734499-734619,734732-734892,734985-735090,735142-735236,
            735828-735852,736008-736084,736196-736282,736372-736421,
            736558-736639,736735-736795,737064-737116,737206-737395,
            737472-737595,737860-737962,738064-738156,740344-740422,
            740508-740584,740915-741043,742614-742731,742816-742913,
            743457-743546,744998-745123,745238-745351,745488-745611,
            745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = -2

Query: 202  NLALYVF*YVTYLIIVTQYEIIYISIRKISSLPPFLNFL 86
            +LA+Y F ++  L++V  +++   + +K ++LP F+ FL
Sbjct: 1768 SLAVYGFSWIVLLVLVLLFKLFTATPKKSTALPTFVRFL 1806


>11_01_0572 +
           4565353-4565535,4566856-4567095,4567922-4568086,
           4568612-4568887
          Length = 287

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 496 IRLVWSFMMTKWGIMLYWTTKKYLKTYNDHQLF 594
           IRL W F+   W  +L W  +++  TY D  ++
Sbjct: 57  IRLSWVFLFLLWVYLLNW-VRRFTLTYTDGSIW 88


>07_01_0242 +
           1775704-1776797,1776839-1777759,1778312-1778412,
           1778770-1778900,1779530-1779788,1779823-1780098,
           1780100-1781352
          Length = 1344

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 391 YLQCIEDFFSKSLHGEIPSDSGNEALKLG 305
           YL CIE+F   S  G +P  SG   +  G
Sbjct: 794 YLDCIEEFRRLSEWGTVPPSSGARQISFG 822


>04_03_1013 -
           21714804-21714896,21715202-21715241,21715629-21715691,
           21716381-21716484,21717085-21717187,21717647-21717717,
           21718830-21718925,21719174-21719305
          Length = 233

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 287 SSAHIPASMLAYTMQKHINADTPKTSPIELSAICILVRNIFDNCH 153
           S +   A  + ++M + I    PK   I++S +C L+++   +CH
Sbjct: 75  SQSLFKAYNMKFSMYEKIIISRPKKRSIQMSHVCCLLQSARTHCH 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,917,021
Number of Sequences: 37544
Number of extensions: 356005
Number of successful extensions: 836
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)