Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13e16
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53337-3|AAA96185.2|  194|Caenorhabditis elegans Hypothetical pr...    44   1e-04
Z68760-3|CAA92993.1|  207|Caenorhabditis elegans Hypothetical pr...    33   0.21 
AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine r...    31   0.83 
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    29   4.4  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    29   4.4  

>U53337-3|AAA96185.2|  194|Caenorhabditis elegans Hypothetical
           protein R02E12.6 protein.
          Length = 194

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
 Frame = +1

Query: 181 KIHIALSSIGLVLGVSAFICFCIVYANIEAGMWALLSGINAGLALMLHCHYLKESLHVNF 360
           K+ I ++ +G+  GV A   F I Y N  A     +S   A L L LH  Y K  +   +
Sbjct: 43  KVQIWIAWLGVSAGVMAGTVFAIQYQNWIAVTMCFISSGFATLVLHLHLAYKKTQM-AGW 101

Query: 361 SRKSLQYIGDIGI-IGFVAGGALMIFYIFLETYYQA-DVTPIE-TSIIIRLVWSFMMTKW 531
           S   L+ +  +G  + F++  A++   +     +Q  D   +   ++ I  VW FM +KW
Sbjct: 102 SETRLRCLAAVGATVSFLSFIAMVFCLVVAGIEHQTLDKQGLMGANLWIAAVWFFMTSKW 161

Query: 532 GIMLYWTTKKY 564
             + +   +KY
Sbjct: 162 SALTWRFARKY 172


>Z68760-3|CAA92993.1|  207|Caenorhabditis elegans Hypothetical
           protein F36H1.5 protein.
          Length = 207

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 6/134 (4%)
 Frame = +1

Query: 184 IHIALSSIGLVLGVSAFICFCIVYANIEAGMWALLSGINAGLALMLHCHYLKESLHVNFS 363
           + I  +  G+V G+SA + + I + N  A     ++ + A   L L+   LK++  VN+ 
Sbjct: 55  VRIGWTIFGIVFGISAILTYAIKFHNWSATATTAIATLFACETLYLY-WALKKNTIVNWK 113

Query: 364 RKSLQYI----GDIGIIGFVAGGALMIFYIFLETYYQAD--VTPIETSIIIRLVWSFMMT 525
             + Q +      IG++G +  G L+ + I   T+  A         ++     WS ++T
Sbjct: 114 SSTFQLMIWPNVFIGLLGLL--GCLVCYIIAGITHQGAGSIQAMYGENLWFTGSWSLVIT 171

Query: 526 KWGIMLYWTTKKYL 567
           KW     +  +KYL
Sbjct: 172 KWTWQNAFFARKYL 185


>AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine
           receptor, class x protein16 protein.
          Length = 286

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 439 IFLETYYQADVTPIETSIIIRLVWSFMMTKWGIMLYWTTKKYLKTYND 582
           +FL +YY+   +P  T ++  ++W  + T W ++LY     + K Y+D
Sbjct: 105 VFLPSYYERVFSPFGTKVMTYIIW-VVSTIWCVVLYEIVACHFK-YDD 150


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 363 EKKSSIHWRYWHYWLCGWWCSDDLLHI 443
           E++  + W+Y  YW C  W S+ LL +
Sbjct: 412 EREFFVKWKYLSYWQCS-WVSEMLLEV 437


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 363 EKKSSIHWRYWHYWLCGWWCSDDLLHI 443
           E++  + W+Y  YW C  W S+ LL +
Sbjct: 412 EREFFVKWKYLSYWQCS-WVSEMLLEV 437


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,408,654
Number of Sequences: 27780
Number of extensions: 349724
Number of successful extensions: 949
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)