Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13e16
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    26   0.41 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    26   0.41 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    26   0.41 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    25   0.55 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    25   0.55 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.9  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -3

Query: 258 SVYNAKTYKCGYTQNKSNRT*RYMYFST*HI**LSLSMRLFIFQ*GRFPP 109
           +++N   YK  Y  N  N   + +Y++  +I  + + + ++    G FPP
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYY---GNFPP 135


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -3

Query: 258 SVYNAKTYKCGYTQNKSNRT*RYMYFST*HI**LSLSMRLFIFQ*GRFPP 109
           +++N   YK  Y  N  N   + +Y++  +I  + + + ++    G FPP
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYY---GNFPP 135


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -3

Query: 258 SVYNAKTYKCGYTQNKSNRT*RYMYFST*HI**LSLSMRLFIFQ*GRFPP 109
           +++N   YK  Y  N  N   + +Y++  +I  + + + ++    G FPP
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYY---GNFPP 135


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -1

Query: 206 IELSAICILVRNIFDNCHS 150
           ++ +  CIL++++FDN H+
Sbjct: 39  LQANRACILIKDLFDNVHN 57


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -1

Query: 206 IELSAICILVRNIFDNCHS 150
           ++ +  CIL++++FDN H+
Sbjct: 22  LQANRACILIKDLFDNVHN 40


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -3

Query: 258 SVYNAKTYKCGYTQNKSNRT*RYMYFST*HI**LSLSMRLFIFQ*GRFP 112
           +++N   YK  Y  N  N   + +Y++  +I  + + + + I+  G FP
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPVPVPVPIYC-GNFP 136


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 211 LVLGVSAFICFCIVY 255
           +++G SAF+C  +VY
Sbjct: 395 VLIGWSAFLCISLVY 409


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 442 ICRRSSEHHQPQSQ*CQYLQC 380
           +CRR +E  + +S   ++LQC
Sbjct: 25  LCRRDAEIQELRSHLDKFLQC 45


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 248 MQKHINADTPKTSPIELSA 192
           +Q H ++ TP   P++LSA
Sbjct: 499 VQPHQDSATPADQPLDLSA 517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,936
Number of Sequences: 438
Number of extensions: 4457
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)