Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13e14
         (273 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical pr...    28   0.79 
Z34800-1|CAA84321.2|  420|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine re...    26   4.2  
AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine re...    26   4.2  
U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z68114-7|CAA92161.1|  317|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical
           protein T10H4.8 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 102 FFFERTFELVSQSIFENLNKGKLWKDIKHKYEN*IVNVQFIS*FINLIKICYKHKKK 272
           +F   T E +   +F NLN G ++K +   + +  V +QF + FIN++ +    +K+
Sbjct: 5   YFHPETCENIG--LFSNLNCGDIYKKLGLLFADINVCLQFFTVFINILHLIVLFQKE 59


>Z34800-1|CAA84321.2|  420|Caenorhabditis elegans Hypothetical
           protein F45H7.1 protein.
          Length = 420

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 54  VFKRTSTFALAVAGGTFFF 110
           V KR++TF+L +AG  FFF
Sbjct: 401 VAKRSNTFSLQLAGEFFFF 419


>AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform a protein.
          Length = 308

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 14  NFQNVRVVYIKSYCFQTYIYVCFGCCRRNVL 106
           N  N++++ + S+ F+ +  V FGC  RNV+
Sbjct: 268 NRNNLKIL-LTSFNFKKFFAVIFGCTGRNVV 297


>AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform b protein.
          Length = 329

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 14  NFQNVRVVYIKSYCFQTYIYVCFGCCRRNVL 106
           N  N++++ + S+ F+ +  V FGC  RNV+
Sbjct: 289 NRNNLKIL-LTSFNFKKFFAVIFGCTGRNVV 318


>U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical
           protein F45F2.6 protein.
          Length = 581

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 11  ENFQNVRVV-YIKSYCFQTYIYVCFGCCRRNVLL*KN 118
           E   N+ VV YI ++ F TY+ + F CC   + L KN
Sbjct: 173 ETRHNIYVVKYILAFLF-TYLQMHFLCCNSKIDLPKN 208


>Z68114-7|CAA92161.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.10 protein.
          Length = 317

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 86  CCRRNVLL*KNI*ISVSIDI*KPQQRKIMEGHQAQ-I*KLNCKCSIY 223
           C RRN++L  N  + +S    + Q R ++ G   Q    L C C I+
Sbjct: 204 CLRRNIILFINSKLDLSSTTMRQQNRALINGLTLQAFLPLFCVCPIF 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,826,886
Number of Sequences: 27780
Number of extensions: 100199
Number of successful extensions: 216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)