Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13e03
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0402 - 20991628-20991755,20992461-20992578,20992670-209927... 77 8e-15
06_03_1398 - 29867458-29867582,29868460-29868577,29868665-298687... 74 8e-14
01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816... 74 1e-13
01_06_1567 + 38293612-38293795,38294467-38294523,38294609-382946... 73 1e-13
04_03_0632 + 18200844-18200970,18201134-18201190,18201370-182014... 69 2e-12
05_04_0366 - 20663243-20663388,20663467-20663572,20664275-206643... 68 5e-12
05_06_0058 + 25258532-25258685,25258767-25258823,25258923-252590... 61 6e-10
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483... 44 7e-05
09_04_0353 + 16915618-16916934 33 0.23
11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174... 27 8.7
>05_04_0402 -
20991628-20991755,20992461-20992578,20992670-20992762,
20992841-20992978,20993070-20993197,20993270-20993430,
20993548-20993638,20993731-20993787,20993986-20994139
Length = 355
Score = 77.4 bits (182), Expect = 8e-15
Identities = 36/88 (40%), Positives = 46/88 (52%)
Frame = +1
Query: 262 RAAAGGFAYLKQWMWWLGLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXXXKFL 441
RA GG+ YL + +WW+G+ITM IGE VTPLG L
Sbjct: 50 RAGVGGYGYLLEPLWWVGMITMLIGEIANFVAYMFAPAVLVTPLGALSIIVSAVLAHFIL 109
Query: 442 NEKLNFMGKIACFXCIIGSIVFVIHSPE 525
NEKL MG + C CI+GS V ++H+PE
Sbjct: 110 NEKLQRMGVLGCVLCIVGSTVIILHAPE 137
>06_03_1398 -
29867458-29867582,29868460-29868577,29868665-29868757,
29868980-29869117,29869193-29869320,29869417-29869577,
29869683-29869773,29869858-29869914,29870654-29870777
Length = 344
Score = 74.1 bits (174), Expect = 8e-14
Identities = 33/91 (36%), Positives = 47/91 (51%)
Frame = +1
Query: 253 GNVRAAAGGFAYLKQWMWWLGLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXXX 432
G VRA GG+ YL + +WW G++TM +GE VTPLG
Sbjct: 37 GGVRAGGGGYTYLLEPLWWAGMMTMLLGEIANFVAYTFAPAVLVTPLGALSIIVSSFLAH 96
Query: 433 KFLNEKLNFMGKIACFXCIIGSIVFVIHSPE 525
L E+L +G + C CI+GS++ VIH+P+
Sbjct: 97 FVLKERLEKLGVLGCVSCIVGSVIVVIHAPQ 127
>01_06_1512 +
37881055-37881229,37881388-37881444,37881537-37881627,
37881759-37881919,37882002-37882129,37882215-37882352,
37882665-37882757,37882858-37882975,37883064-37883194
Length = 363
Score = 73.7 bits (173), Expect = 1e-13
Identities = 33/90 (36%), Positives = 47/90 (52%)
Frame = +1
Query: 262 RAAAGGFAYLKQWMWWLGLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXXXKFL 441
RA GG+ YL + +WW+G++TM +GE VTPLG L
Sbjct: 57 RAGVGGYGYLLEPLWWVGMVTMLVGEIANFIAYMFAPAVLVTPLGALSIIVSAVLAHFTL 116
Query: 442 NEKLNFMGKIACFXCIIGSIVFVIHSPEIR 531
NEKL +G + C CI+GS V ++H+P+ R
Sbjct: 117 NEKLQRVGVLGCVLCIVGSTVIILHAPQER 146
>01_06_1567 +
38293612-38293795,38294467-38294523,38294609-38294699,
38294799-38294959,38295045-38295172,38295291-38295428,
38295717-38295809,38298219-38298324,38298393-38298517
Length = 360
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/94 (35%), Positives = 47/94 (50%)
Frame = +1
Query: 250 SGNVRAAAGGFAYLKQWMWWLGLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXX 429
+ VRA GG++YL + +WW G+ITM +GE VTPLG
Sbjct: 56 ASGVRAGVGGYSYLYEPLWWAGMITMIVGEVANFAAYAFAPAILVTPLGALSIIISAVLA 115
Query: 430 XKFLNEKLNFMGKIACFXCIIGSIVFVIHSPEIR 531
L EKL+ G + C C++GS V+H+P+ R
Sbjct: 116 DIMLKEKLHIFGILGCVLCVVGSTTIVLHAPQER 149
>04_03_0632 +
18200844-18200970,18201134-18201190,18201370-18201460,
18201545-18201705,18202176-18202303,18202386-18202523,
18202966-18203058,18203546-18203704
Length = 317
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/92 (31%), Positives = 48/92 (52%)
Frame = +1
Query: 259 VRAAAGGFAYLKQWMWWLGLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXXXKF 438
VRA +GG++YL + +WW+G+ M +GE VTPLG
Sbjct: 40 VRAGSGGYSYLYEPLWWIGMTAMILGEVANFAAYAFAPAILVTPLGALSIIFSAVLAHFI 99
Query: 439 LNEKLNFMGKIACFXCIIGSIVFVIHSPEIRR 534
L E+L+ G + C C++GS+ V+H+P+ ++
Sbjct: 100 LKERLHMFGIVGCILCVVGSVGIVLHAPKEKK 131
>05_04_0366 -
20663243-20663388,20663467-20663572,20664275-20664367,
20664520-20664657,20664759-20664886,20664996-20665156,
20665277-20665367,20665460-20665516,20666288-20666444
Length = 358
Score = 68.1 bits (159), Expect = 5e-12
Identities = 31/95 (32%), Positives = 45/95 (47%)
Frame = +1
Query: 250 SGNVRAAAGGFAYLKQWMWWLGLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXX 429
+ VRA GG++YL + +WW G+ M +GE VTPLG
Sbjct: 47 ASGVRAGVGGYSYLLEPLWWAGMTAMIVGEIANFAAYAFAPAILVTPLGALSIIISAVLA 106
Query: 430 XKFLNEKLNFMGKIACFXCIIGSIVFVIHSPEIRR 534
L EKL+ G + C C++GS V+H+P R+
Sbjct: 107 HIILREKLHIFGILGCILCVVGSTSIVLHAPPERQ 141
>05_06_0058 +
25258532-25258685,25258767-25258823,25258923-25259013,
25259074-25259282,25259421-25259548,25259651-25259788,
25261017-25261083,25261232-25261353
Length = 321
Score = 61.3 bits (142), Expect = 6e-10
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Frame = +1
Query: 250 SGNVRAAAGGFAYLKQWMWWLGLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXX 429
+ +RA GG++YL + +WW+G+ITM +GE VTPLG
Sbjct: 46 ASGIRAGVGGYSYLLEPLWWVGMITMIVGEVANFVAYAFAPAVLVTPLGALSIIVSVILR 105
Query: 430 XK----------------FLNEKLNFMGKIACFXCIIGSIVFVIHSPE 525
LNE+L+ +G + C CI GS+V VIH+P+
Sbjct: 106 VVCVFGGVFAFSAVLAHFILNERLHALGVLGCVMCIAGSVVIVIHAPQ 153
>11_01_0607 -
4837257-4837447,4837526-4837631,4837913-4838005,
4838405-4838542,4838651-4838778,4838889-4839049,
4839145-4839235,4841437-4841602
Length = 357
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +1
Query: 313 GLITMSIGEXXXXXXXXXXXXXXVTPLGXXXXXXXXXXXXKFLNEKLNFMGKIACFXCII 492
G+ + +GE VTPLG L EKL+ G + C C++
Sbjct: 52 GVRAVIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHAILQEKLHTFGILGCVLCVV 111
Query: 493 GSIVFVIHSPEIR 531
GSI V+H+P+ R
Sbjct: 112 GSITIVLHAPQER 124
>09_04_0353 + 16915618-16916934
Length = 438
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 296 CFKYAKPPAAALTFPEAIIFFNASFFIMKLEPMKILD 186
CFK+ PP +T PE ++ F+ + + LE ++D
Sbjct: 354 CFKWPPPPRRMVTLPEMVLHFDGADMELPLENYMVMD 390
>11_01_0223 +
1746203-1746228,1746344-1746463,1746942-1747062,
1747441-1747572,1748266-1748375,1748465-1748648,
1749153-1749305,1749672-1749818
Length = 330
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 258 CKSCSRRLRVFKTMDVVAGINNNEH 332
C +C RR +D+V+ I+NN H
Sbjct: 164 CPNCERRYSSLNALDLVSHIDNNFH 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,944,795
Number of Sequences: 37544
Number of extensions: 187010
Number of successful extensions: 362
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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