Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13e02
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78201-4|CAB01590.2|  911|Caenorhabditis elegans Hypothetical pr...    64   8e-11
Z78019-10|CAE46691.1|  911|Caenorhabditis elegans Hypothetical p...    64   8e-11
AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ...    30   1.2  
U53151-3|AAB37067.2|  388|Caenorhabditis elegans Serpentine rece...    29   3.7  
AC006790-6|AAF60734.1|  299|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z49913-1|CAA90142.1|  340|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z78201-4|CAB01590.2|  911|Caenorhabditis elegans Hypothetical
           protein ZK836.2 protein.
          Length = 911

 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 41/122 (33%), Positives = 63/122 (51%)
 Frame = +1

Query: 277 YHSGAGVFGHRPTIADEYEIPEDIISKRYKNCRAQQLVNAYRTYGHLKATIDNVDYRNES 456
           Y  G GVFGH P       + E+      +N +   L+NA+R YG+L+A +D +  R + 
Sbjct: 24  YRPGHGVFGHLPD--PPKRVFENQGGLTPENAQRVHLINAFRRYGYLEADLDPLGLR-KV 80

Query: 457 RNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSLVDELVKIYCGHISYEFTHLESEAE 636
            ++ EL  + YGL  +E V         GN S+  L ++L  IYCG  + EF H+ +  E
Sbjct: 81  ESVAELDPAIYGLSLDENV--------KGNFSLHDLAEQLRHIYCGPTAIEFMHINNWEE 132

Query: 637 RE 642
           R+
Sbjct: 133 RQ 134


>Z78019-10|CAE46691.1|  911|Caenorhabditis elegans Hypothetical
           protein ZK836.2 protein.
          Length = 911

 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 41/122 (33%), Positives = 63/122 (51%)
 Frame = +1

Query: 277 YHSGAGVFGHRPTIADEYEIPEDIISKRYKNCRAQQLVNAYRTYGHLKATIDNVDYRNES 456
           Y  G GVFGH P       + E+      +N +   L+NA+R YG+L+A +D +  R + 
Sbjct: 24  YRPGHGVFGHLPD--PPKRVFENQGGLTPENAQRVHLINAFRRYGYLEADLDPLGLR-KV 80

Query: 457 RNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSLVDELVKIYCGHISYEFTHLESEAE 636
            ++ EL  + YGL  +E V         GN S+  L ++L  IYCG  + EF H+ +  E
Sbjct: 81  ESVAELDPAIYGLSLDENV--------KGNFSLHDLAEQLRHIYCGPTAIEFMHINNWEE 132

Query: 637 RE 642
           R+
Sbjct: 133 RQ 134


>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
           protein T22B11.5 protein.
          Length = 1029

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
 Frame = +1

Query: 373 RAQQLVNAYRTYGHLKATIDNVDYRNESRNIK---ELHYSRYGL-----DPEETVDTGLL 528
           + Q L+ +Y+T GH  A +D +   +   +     EL  S YGL     D E  +     
Sbjct: 140 KIQLLIRSYQTRGHNIADLDPLGINSADLDDTIPPELELSFYGLGERDLDREFLLPPTTF 199

Query: 529 YGYSGNNSIKSLVDELVKIYCGHISYEFTHLESEAERE 642
                + +++ ++  L  IYC     E+ HL +  +++
Sbjct: 200 ISEKKSLTLREILQRLKDIYCTSTGVEYMHLNNLEQQD 237


>U53151-3|AAB37067.2|  388|Caenorhabditis elegans Serpentine
           receptor, class r protein9 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 468 FDIPAFISVV-YVIYSSL*MSVRTVGVDQLLRSAVLISL*YYVLWNLVFIC 319
           F IP F++++ ++IY+ +   +   G++Q L S + I +    +W +  IC
Sbjct: 139 FSIPWFVAIMSWIIYNFINGKIYYGGIEQNLLSRIFILVTNLYIWYISTIC 189


>AC006790-6|AAF60734.1|  299|Caenorhabditis elegans Hypothetical
           protein Y49F6B.8 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -3

Query: 336 NLVFICNRRSMPEDSRARMVQNTIVQTIHLTP*STHSH-FTKTQ-HTVS 196
           +L ++CN   + ED++ R V+   + TI     S H+H F +T  HTVS
Sbjct: 248 DLPYVCNLMIIAEDAKFRNVETCCIATIV----SYHAHDFIRTMIHTVS 292


>Z49913-1|CAA90142.1|  340|Caenorhabditis elegans Hypothetical
           protein ZK938.2 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 479 IRGTVSIPKKQWTRVSCMVIAATTQSKA**MNW--LKYIAGIYRMSSRIWSQKQKEN 643
           ++GTV +  K      C+ I    +S+   +NW  L     ++R S  +W  K  +N
Sbjct: 25  VKGTVVLTNKTPLDARCVTIKCRGKSETYLINWTDLYCKKDLFRKSEMVWVSKDGQN 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,898,447
Number of Sequences: 27780
Number of extensions: 281277
Number of successful extensions: 713
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)