Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13e02
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   1.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   3.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.8  

>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 430 DNVDYRNESRNIKELHYS 483
           +N +Y N + N K LHY+
Sbjct: 320 NNYNYNNYNNNYKPLHYN 337


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +1

Query: 433 NVDYRNESRNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSLVDELVKIYCGHISYEF 612
           N +YR + R  ++LH  +  L  E T  +   Y  S     KS  +E      G  S E 
Sbjct: 242 NREYRKKDRRYEKLHNEKEKLLEERT--SRERYSRSREREQKSYKNEREYRKYGETSKER 299

Query: 613 THLESEAER 639
           +   +E ER
Sbjct: 300 SRDRTERER 308


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 523 LLYGYSGNNSIKSLVDELVKIY 588
           L+ G SGN   K L D+L+  Y
Sbjct: 15  LISGCSGNPDAKRLYDDLLSNY 36


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = +1

Query: 433 NVDYRNESRNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSLVDELVKIYCGHISYEF 612
           N +YR + R  ++LH  +  L  E T  +   Y  S     KS  +E      G  S E 
Sbjct: 231 NREYRKKDRQYEKLHNEKEKLLEERT--SRKRYSRSREREQKSYKNEREYRKYGKTSKER 288

Query: 613 THLESEAER 639
           +    E ER
Sbjct: 289 SRDRMERER 297


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 17/79 (21%), Positives = 30/79 (37%)
 Frame = +1

Query: 280 HSGAGVFGHRPTIADEYEIPEDIISKRYKNCRAQQLVNAYRTYGHLKATIDNVDYRNESR 459
           H+G G +GH P    E ++P +              +   R   H    I N D      
Sbjct: 275 HTGLGHYGHHPD-PGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTDIQNCD------ 327

Query: 460 NIKELHYSRYGLDPEETVD 516
           ++K    + + +D  +T+D
Sbjct: 328 SVKIKFETLHTMDSSDTID 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,730
Number of Sequences: 438
Number of extensions: 3846
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)