Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13e01
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    29   0.62 
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    28   1.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.9  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   3.3  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   3.3  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   3.3  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   5.8  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   7.7  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.7  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    25   7.7  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   7.7  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 96  KNFLFNSQNLCYSLRASALGRCVDWLAS 13
           K+FLF   ++  SL  S+LGRC   LAS
Sbjct: 216 KSFLFKKSSIDNSLLHSSLGRCFSALAS 243


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 162 VRGVRKLRAEWTFWLEWEHSTDKNFLFNSQNLCY 61
           + G  K    +T WL   + +DK FL N  ++CY
Sbjct: 319 IPGTSKNWEAYTAWLTSSNDSDKKFLPNMVDVCY 352


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
 Frame = +3

Query: 375  PSVIMRAHKDGTCSPEPLP------PPPAHGMNMLKTLKFKMNRGHSYSQTKYIASQTSP 536
            P+ + R   DG  +  P P      PPP    N+L +   +  + H  S        TSP
Sbjct: 945  PTKLTRPSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSP 1004

Query: 537  PVPVAVQPP 563
              P+A  PP
Sbjct: 1005 AAPLARVPP 1013


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 156 LSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSKRS 317
           L  P T    E K   P      +R  E+S+ P  + TPQ  ++       KR+
Sbjct: 306 LLTPQTLSTSETKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAPSAPRLQKRA 359


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 21/109 (19%), Positives = 37/109 (33%)
 Frame = +3

Query: 237 ESSSPPAGLVTPQPSDSEGEDEFSKRSXXXXXXXXXXXXXXXXXYRPSVIMRAHKDGTCS 416
           ++++P +     +  D+ G ++F+ RS                   P +    H  G   
Sbjct: 364 DNNTPMSEKRKREDDDANGPNKFAARSSAVFSKATAEPAFKSAMAIPDMPSMPHVQGF-- 421

Query: 417 PEPLPPPPAHGMNMLKTLKFKMNRGHSYSQTKYIASQTSPPVPVAVQPP 563
           P P PP    G+  +  +      G  Y   +      S P   +V PP
Sbjct: 422 PAPFPPFMMPGLPQMPPMMMNAIAGQVYHNNRNPPRTNSRPSNASVPPP 470


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -3

Query: 205 GSSTLFSINGGVDGGERGPQTSSRVDILVRMGTFNR*KLSF*FTKLVLFAARFRSREVCR 26
           G++ LF +N    GG R    S   +  + +G  +     F      LFA+R+ S +  +
Sbjct: 160 GTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEF--DVYSLFASRYNSCKSAK 217

Query: 25  LASERQTN 2
           + ++ QTN
Sbjct: 218 IMTDPQTN 225


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 105 NVPILTRMSTLLEVCGPLSPPSTPPLME-NKVELPLKKIAAKRARESSSPPAGLVTPQPS 281
           + P+L   S+LL+   PL+  S+   ME       LKK   +R   SS       TPQ S
Sbjct: 540 HTPVLKHTSSLLDHHSPLATSSSEHEMEATPSPALLKKTNKRRELPSSLTKKNTRTPQRS 599


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 344 HDAAPGAVLQALGHHAGPQGRHLQSGASAAPARARHEH 457
           HD     + + LG H G  G H  SG+ +  +   + H
Sbjct: 208 HDIPSQFIFRKLGLHHGKHGHHGHSGSLSLKSLVPNHH 245


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 426 LPPPPAHGMNMLKTLKFKMNRGHSYSQTKYIASQTSP-PVP 545
           +PPPP++  +   +  ++ N  ++ S     AS  +P PVP
Sbjct: 151 MPPPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLPVP 191


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 201 LPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSK 311
           +P KK AAK+ARE+      + +  P+D +  D+  +
Sbjct: 1   MPRKKSAAKKAREALVQKKVINSNVPTDKKSIDQLQE 37


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 447 GMNMLKTLKFKMNRGHSYSQTKYIASQTSPP 539
           G N   T     N+ H Y Q  Y AS T+ P
Sbjct: 247 GFNTFNTSPHIFNQRHQYLQNYYTASLTNIP 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,808
Number of Sequences: 5004
Number of extensions: 39251
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)