Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13e01
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29382-6|AAF99998.1|  379|Caenorhabditis elegans Hypothetical pr...    35   0.046
U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z68751-9|CAA92979.2|  238|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z68337-11|CAA92754.2|  238|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    29   2.3  
Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF098992-8|AAC67454.2|  239|Caenorhabditis elegans Hypothetical ...    27   7.0  
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z82273-1|CAB54978.2|  565|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z82263-7|CAJ76937.1|  565|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U50310-5|AAA92541.1|  318|Caenorhabditis elegans Ground-like (gr...    27   9.3  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U29382-6|AAF99998.1|  379|Caenorhabditis elegans Hypothetical
           protein R03H10.1 protein.
          Length = 379

 Score = 34.7 bits (76), Expect = 0.046
 Identities = 17/53 (32%), Positives = 33/53 (62%)
 Frame = +3

Query: 87  ESFYLLNVPILTRMSTLLEVCGPLSPPSTPPLMENKVELPLKKIAAKRARESS 245
           +S  +LN+P+  +++  L++   L+P S+ PL+   +   LKK+  KR +E+S
Sbjct: 250 KSLAVLNIPL--KLAVDLQIVEVLTPLSSSPLLNGPIHEILKKLEGKREKENS 300


>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 153 PLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQP 278
           P +P   PP++  +VELP K  +  + + + SPP   VTP P
Sbjct: 335 PSTPIPAPPVLVPQVELPAKTSSVSQ-KTTVSPPVEKVTPPP 375


>Z68751-9|CAA92979.2|  238|Caenorhabditis elegans Hypothetical
           protein T05E11.7 protein.
          Length = 238

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 138 LEVCGPLSPPST--PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSK 311
           L VCG    P+T  P  + + +E P   +   +    S  PAG    + +  + ED+ ++
Sbjct: 3   LFVCGKSKKPTTASPAALPSSIESPGPPVPQTQKSSKSQQPAGSAEEKKNPEKAEDKQNR 62

Query: 312 RS 317
           +S
Sbjct: 63  KS 64


>Z68337-11|CAA92754.2|  238|Caenorhabditis elegans Hypothetical
           protein T05E11.7 protein.
          Length = 238

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 138 LEVCGPLSPPST--PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSK 311
           L VCG    P+T  P  + + +E P   +   +    S  PAG    + +  + ED+ ++
Sbjct: 3   LFVCGKSKKPTTASPAALPSSIESPGPPVPQTQKSSKSQQPAGSAEEKKNPEKAEDKQNR 62

Query: 312 RS 317
           +S
Sbjct: 63  KS 64


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 484 FILNLSVLSMFMPCAGGGGRGSG 416
           F+L + V S   P AGGGG G G
Sbjct: 11  FLLTIHVSSFLFPSAGGGGGGGG 33


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 484 FILNLSVLSMFMPCAGGGGRGSG 416
           F+L + V S   P AGGGG G G
Sbjct: 11  FLLTIHVSSFLFPSAGGGGGGGG 33


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 150 GPLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPS 281
           GP  PP  PPL+ +   LP +K   + A   ++ PA    P+PS
Sbjct: 2   GPPPPPPPPPLLPSGEILPSRKWKTEDAPRRNNHPAP-APPKPS 44


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 375  PSVIMRAHKDGTCSPEPLPPPPAHGMNMLKTLKFKMNR 488
            PS+      D   SP PLPP PAH   +   L  K+++
Sbjct: 2102 PSIEEEDDPDDKSSPLPLPPSPAHIQQLPSNLAPKLSQ 2139


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 375  PSVIMRAHKDGTCSPEPLPPPPAHGMNMLKTLKFKMNR 488
            PS+      D   SP PLPP PAH   +   L  K+++
Sbjct: 2102 PSIEEEDDPDDKSSPLPLPPSPAHIQQLPSNLAPKLSQ 2139


>Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical
           protein F33H1.3 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 174 PPLMENKVELPLKKIAAKRA-RESSSPPAGLVTPQPSDSEGEDE 302
           P +++ KVE  L     + A ++   PP GL  P  SDSE E+E
Sbjct: 159 PAMIKRKVEFQLPPRPVRVAGQKPPGPPCGLA-PNFSDSEEEEE 201


>AF098992-8|AAC67454.2|  239|Caenorhabditis elegans Hypothetical
           protein F53C3.3 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 484 FILNLSVLSMFMPCAGGGGRGSG 416
           F+L  S+LS  +   GGGGRG G
Sbjct: 8   FLLICSLLSRSIDARGGGGRGGG 30


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 186 ENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDE 302
           E +V+   KK      + S  P A + + +PSD+E E+E
Sbjct: 436 EEEVDYSPKKKVKSPKKSSKKPAAKVESEEPSDNEEEEE 474


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 429 PPPPAHGMNMLKTLKFKMNRGHSYSQ-TKYIASQTSPPVPVAVQPP 563
           PPPP        T+KF ++ G SYS  T     + +PP P  +  P
Sbjct: 434 PPPPPSAP---PTIKFPISTGTSYSSTTPPTTPKPAPPPPSRIPNP 476


>Z82273-1|CAB54978.2|  565|Caenorhabditis elegans Hypothetical
           protein F56F12.1 protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 495 SYSQTKYIASQTSPPVPVAVQPP 563
           SYSQ K+  +++ PPVP + +PP
Sbjct: 130 SYSQVKH--NESKPPVPPSTKPP 150


>Z82263-7|CAJ76937.1|  565|Caenorhabditis elegans Hypothetical
           protein F56F12.1 protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 495 SYSQTKYIASQTSPPVPVAVQPP 563
           SYSQ K+  +++ PPVP + +PP
Sbjct: 130 SYSQVKH--NESKPPVPPSTKPP 150


>U50310-5|AAA92541.1|  318|Caenorhabditis elegans Ground-like (grd
           related) protein 9 protein.
          Length = 318

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
 Frame = +3

Query: 153 PLSPPSTPPLMENKVELPLKKIAAKRAR--------ESSSPPAGLVTPQPSDSEGED 299
           P  PP  P L + +V+LPL+     R          E  +P A +  PQP  ++ E+
Sbjct: 142 PPPPPPPPQLQQQQVQLPLQDATTLRPSTLPSETYVELENPEAVVNEPQPIQAQTEE 198


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 429 PPPPAHGMNMLKTLKFKMNRGHSYSQ-TKYIASQTSPPVPVAVQPP 563
           PPPP        T+KF ++ G SYS  T     + +PP P  +  P
Sbjct: 441 PPPPPSAP---PTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNP 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,049,958
Number of Sequences: 27780
Number of extensions: 252628
Number of successful extensions: 1292
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)