Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13e01
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    26   0.23 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.6  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 162 PPSTPPLMENKVELPLKKIAAKRARESSS--PPAGL 263
           PP TPP  EN +++ L+ I + R   +++  P AG+
Sbjct: 45  PPVTPPQGENMLDMDLRGIYSNRTDFTTTFRPTAGM 80


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
 Frame = +3

Query: 414  SPEPLPPPPA-HGMN 455
            SPEP PPPP  H  N
Sbjct: 1856 SPEPPPPPPRNHDQN 1870


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 439 GGGGRGSGLQVPSLWARMMT 380
           G  G G GLQ  SLWA  +T
Sbjct: 761 GRSGYGIGLQKGSLWADAVT 780


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 402 DGTCSPEPLPPPP 440
           D    P+P PPPP
Sbjct: 334 DSDTPPKPAPPPP 346


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 417  PEPLPPPPAHGMNML 461
            P P PPPP+ G   L
Sbjct: 1355 PPPPPPPPSSGQAYL 1369


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 445 CAGGGGRGSGLQVPSL 398
           CAGGGGR S +   SL
Sbjct: 9   CAGGGGRLSSVLSLSL 24



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 129 TFWLEW 112
           TFWLEW
Sbjct: 321 TFWLEW 326


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 445 CAGGGGRGSGLQVPSL 398
           CAGGGGR S +   SL
Sbjct: 9   CAGGGGRLSSVLSLSL 24



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 129 TFWLEW 112
           TFWLEW
Sbjct: 290 TFWLEW 295


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 445 CAGGGGRGSGLQVPSL 398
           CAGGGGR S +   SL
Sbjct: 9   CAGGGGRLSSVLSLSL 24



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 129 TFWLEW 112
           TFWLEW
Sbjct: 341 TFWLEW 346


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 445 CAGGGGRGSGLQVPSL 398
           CAGGGGR S +   SL
Sbjct: 9   CAGGGGRLSSVLSLSL 24



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 129 TFWLEW 112
           TFWLEW
Sbjct: 290 TFWLEW 295


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 420 EPLPPPP 440
           EPLPPPP
Sbjct: 373 EPLPPPP 379


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/55 (21%), Positives = 23/55 (41%)
 Frame = +2

Query: 299 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGPQGRHLQSGASAAPARARHEHAQ 463
           ++Q A     G++     +P  V   + H    Q  H+Q       ++A+ +H Q
Sbjct: 142 KLQAAAVDHQGSVLDGPDSPPLVESQMHHQMHTQHPHMQPQQGQHQSQAQQQHLQ 196


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 181 NGGVDGGERGPQTSSRVDI 125
           NG  +G  R P+++SR  +
Sbjct: 316 NGSNNGSPRSPESNSRCSV 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,086
Number of Sequences: 438
Number of extensions: 3076
Number of successful extensions: 20
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)