Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13d19
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    28   0.72 
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   2.9  
SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom...    26   3.8  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   8.9  

>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 237 SSKMGVSTSVCGRTTHNPGTVEVSGFLGASKTLGPGDTDLDV 112
           +SK+G+  +   R   +   + +  FL  S ++GPG T+LD+
Sbjct: 320 TSKIGLLKAYPNRVLMDKQGIHIGLFLEESPSIGPGMTNLDI 361


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 110 TTSRSVSPGPRVLDAPRKPLTSTVPGLWVVLPQTLVLTPILL 235
           T+ R V    ++L + RK   + +    +VLP+ LVL PIL+
Sbjct: 650 TSVRLVEGVVKILSSYRKVAANRLTPGQLVLPKNLVLLPILI 691


>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 222 VSTSVCGRTTHNPGTVEVSGFLGASKTLGPGDTDLDVVVEFDG 94
           +S  +C R  H+ G  +++   G++  LG G   + V+ E  G
Sbjct: 160 MSLGLCARVIHDAGRTQIAS--GSATVLGIGPGPVSVINEVTG 200


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 95  PSNSTTTSRSVSPGPRVLDAPRK 163
           PSN+    +SV P   V+ +PRK
Sbjct: 529 PSNAKAVKKSVVPSSPVVPSPRK 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,595
Number of Sequences: 5004
Number of extensions: 30150
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)