Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13d17
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...   224   1e-59
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...   204   1e-53
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    28   1.00 
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    27   1.7  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    27   2.3  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   4.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.0  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   9.3  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score =  224 bits (547), Expect = 1e-59
 Identities = 109/175 (62%), Positives = 133/175 (76%), Gaps = 1/175 (0%)
 Frame = +3

Query: 120 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGK 299
           M I+ + ARQI+DSRGNPTVEVDL TE G+ RA VPSGASTG+ EALE+RD  K+++ GK
Sbjct: 1   MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGK 60

Query: 300 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 479
           GVL A+ N+N +IAP + KANL+VT Q+  DE +LKLDGTENKSKLGANAILGVS+    
Sbjct: 61  GVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILGVSMAICR 120

Query: 480 XXXXXXNVPLYKHLADLAG-NNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTG 641
                  +PL+K++A+  G     VLPVP+FNV+NGGSHAG  LA QEFMI PTG
Sbjct: 121 AGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILPTG 175


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score =  204 bits (497), Expect = 1e-53
 Identities = 97/171 (56%), Positives = 126/171 (73%), Gaps = 1/171 (0%)
 Frame = +3

Query: 126 IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGV 305
           I+ I +R I+DSRGNPTVEV+L TELG FR+ VPSGASTG  EA ELRDN K+++ GKGV
Sbjct: 4   IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGV 63

Query: 306 LTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXX 485
             A+ N+N +I P L K+++++T QR IDE M+KLDGT +KSKLGAN+I+GVS+      
Sbjct: 64  TIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVGVSMAVARAA 123

Query: 486 XXXXNVPLYKHLADLAGNNDI-VLPVPAFNVINGGSHAGNKLAMQEFMIFP 635
                +PLY+++  LAG+     +PVP+FNV+NGG HAG  LA QEFMI P
Sbjct: 124 AAFLKIPLYEYIGKLAGSKTTECIPVPSFNVLNGGRHAGGDLAFQEFMIMP 174


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = +3

Query: 156 DSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINEL 335
           D +G    +VD       ++A     +ST     LE R N + E     V TAI  + E 
Sbjct: 140 DEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDD-AVHTAILALKET 198

Query: 336 IAPELTKANLEV 371
              ELT+ N+E+
Sbjct: 199 FEGELTEDNIEI 210


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 464 PSCC*GWCCQEE 499
           PSCC G CC+EE
Sbjct: 490 PSCCGGHCCKEE 501


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
 Frame = +3

Query: 93  LRKSSSVLKMVIKSIKARQIFDSRGNPTV-EVDLVTELGLFRAAVPSGASTGVHEALELR 269
           ++   +V+K  I SIK  ++ + +G  TV + D+ +  G    A   G  T +   +   
Sbjct: 171 MKGEMAVMKNDIASIKG-EMAEMKGEMTVMKNDIASIKG--EMAEMKGEMTIMKSDI--- 224

Query: 270 DNIKSEY-HGKGVLTAIKNINELIAPELTKANLEVTQQRE-IDELMLKLDGTENKSK 434
           D++K E    KG +T +KN  + +  E T    EVT  ++ I +L  K+D  + +++
Sbjct: 225 DSVKGEMAEMKGEMTIMKNDIDSVKGETTTLKGEVTAMKDSISQLDRKIDLLDQRTE 281


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 22/98 (22%), Positives = 42/98 (42%)
 Frame = +3

Query: 102  SSSVLKMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIK 281
            +S V   VI++     +    G P +   ++  LG F +   S  S  +    ++ + + 
Sbjct: 1088 TSEVTLSVIRARPGLLVKMVDGEPILTQQVIQNLGGFSSEEVSMVSRCIRSRTQIMNMLA 1147

Query: 282  SEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDE 395
            +E H    +   K +NE +A  L + N E T   E+ +
Sbjct: 1148 TEIHYAASVGQNKYLNEYVA-SLIRTN-EKTHSTELSQ 1183


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 356 FCKFRSNEFIDIFDCGQNSLAMIFTLDV-IS*FKSFMNTSGCTRGYSCPEQAKL 198
           F +   +EF +IF+C  ++LA++      +S   + +N +G    + C   AK+
Sbjct: 657 FVEILESEFPNIFECLVDNLALLHIFQFWMSNEVTSVNCTGIVLSFCCDNLAKI 710


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 225 PSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINEL--IAPELTKANLEVTQQREIDEL 398
           P  A+  +H+  E  +N+KSE+  KG + A K  +E   +   + KA  E    + I ++
Sbjct: 429 PILANIYLHQLDEFIENLKSEFDYKGPI-ARKRTSESRHLHYLMAKAKRENADSKTIRKI 487

Query: 399 MLKLDGTENK 428
            +++    NK
Sbjct: 488 AIEMRNVPNK 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,378
Number of Sequences: 5004
Number of extensions: 46002
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)