Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13d12
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0653 - 5285718-5287094                                           29   3.3  
01_01_0771 - 5982826-5983327,5983424-5984772                           29   4.4  
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354...    28   7.7  
08_01_0578 + 5139324-5140190                                           28   7.7  

>11_01_0653 - 5285718-5287094
          Length = 458

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 536 WVPVTGDGSERNAELQYLKREITRNDTDRLIEPMIRDFEES 658
           W+P  G   E   ++      I R D +++I+P I  F+ES
Sbjct: 156 WIPFLGGSFETLLKMLRRNNAIVRADVEKVIKPNIALFQES 196


>01_01_0771 - 5982826-5983327,5983424-5984772
          Length = 616

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 567 LSEPSPVTGTHSTIGEVFADRCIAAYSITAMLITMLTLN--IKFRRFATMIAMIRHFYRG 394
           L  P   T  H+T+    A  CI  +S   +L ++L+++    F   AT + + R++ RG
Sbjct: 396 LVHPRTGTPVHATVLIAAAGACIGLFSSLDVLSSLLSVSTLFIFMMMATALLVRRYYVRG 455

Query: 393 KQQR 382
              R
Sbjct: 456 VTSR 459


>09_06_0187 +
           21433842-21433887,21434504-21435246,21435437-21435484,
           21435929-21436814,21436967-21437056,21437543-21438417
          Length = 895

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = -3

Query: 589 EILEFRVPLGAIARHRDPLDHRGSVCRQMHRRI*HHSDVNYDAHSKYKISSI 434
           EILE  V   A   H+ PL      C Q  +R   HSD NY    KY IS+I
Sbjct: 291 EILE--VLRAACITHKLPLAQTWVTCAQQGKRGSRHSDENY----KYCISTI 336


>08_01_0578 + 5139324-5140190
          Length = 288

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 251 IVSRRQHGAHLRTPADD 301
           +VSR QHGAH R P D+
Sbjct: 208 LVSRAQHGAHHRAPYDN 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,927,986
Number of Sequences: 37544
Number of extensions: 405282
Number of successful extensions: 999
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)