Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13d12
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50301-4|AAB37052.1|  118|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical ...    28   5.2  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U50301-4|AAB37052.1|  118|Caenorhabditis elegans Hypothetical
           protein F20D6.9 protein.
          Length = 118

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +1

Query: 70  LPVCKFQNISVKFCLPIIIQFIFECDCLQAVKRLAT*AINPQMRVGNICGWKNKHSTQEA 249
           +P  +F+ +  +     +   IF  D + A++      +    R+GN+C  K K  T EA
Sbjct: 45  IPRSRFERLVKELAQDFVTDLIFRKDAIDALQAAVEDYLVELFRLGNLCAIKCKRVTIEA 104


>AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical
           protein F40A3.7 protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 55  RVQNFLPVCKFQNISVKFCLPIIIQFIFECDCLQAVKR 168
           R Q+F+ +CK  +I +   LPII+        L A+++
Sbjct: 203 RYQSFIAICKLAHIFLMIILPIILLLFLNLTLLWALRK 240


>AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical
           protein ZK355.5 protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 34  CLTLSRLRVQNFLPVCKFQNISVKFCLPIIIQFIFECDCLQAVKRLAT*AINPQMRVGNI 213
           CLT+  +   NFL   KF NI  K+C   + + I       A  +L++   N    VGN+
Sbjct: 309 CLTIQEM--MNFLAYVKFTNIQAKYCSQNLAKKIPYLTKPCAFSKLSSSEENCTALVGNV 366


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
           protein F52B5.3 protein.
          Length = 1425

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 271 VLAPRYYTPPECYVYFSTHKYSQPAFED 188
           +LA   Y PPE   +FST +Y +  ++D
Sbjct: 374 ILAMTGYQPPESKAFFSTAEYEEEDWKD 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,099,549
Number of Sequences: 27780
Number of extensions: 354568
Number of successful extensions: 826
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)