Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13d09
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 548 VIGRHAHGDQYKAQDFVVPKPGKVELVY 631
           V+G  AH  Q    D  V  PG   LVY
Sbjct: 336 VVGFMAHEQQKPVADVAVSGPGLAFLVY 363


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 106 CTSISHVSILFVYSP 62
           C SIS++S+L  Y P
Sbjct: 246 CVSISYLSVLAFYLP 260


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 548 VIGRHAHGDQYKAQDFVVPKPGKVELVY 631
           V+G  AH  Q    D     PG   LVY
Sbjct: 389 VVGFMAHEQQKPVADVAASGPGLAFLVY 416


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/50 (22%), Positives = 21/50 (42%)
 Frame = -1

Query: 664 YTPLSRTILCSVNEFNLSGFRYNKILRLVLVAVRMTAYHNRFRPTRHNPR 515
           Y P ++   CS+   N +  +Y ++ + + V +   A      P R   R
Sbjct: 101 YRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAR 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,573
Number of Sequences: 438
Number of extensions: 4202
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)