Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13d08
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    28   3.0  
Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquino...    27   5.2  
AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine r...    26   9.1  

>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 141 LIHIKIREDIDYSYCFICKKTDKLRRTQIVKRCLKK 34
           +I+ +I  DI YS+C  C KT+ L  +Q  K+ + K
Sbjct: 44  IIYCRIAADICYSFCVSCMKTNFL-VSQFSKKLIVK 78


>Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical
           protein F44G4.2 protein.
          Length = 160

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 15  RCARYFVSSNIF*LFVFVSIYLSSYI*NNTNNQYLHEFLYESV 143
           RC  YF+S+ I+  F +   Y S ++  +    YL EF  E +
Sbjct: 94  RCVTYFISAVIWAWFSYHMYYHSGHLLGHWYMPYLSEFTDEEL 136


>AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquinone
           oxidoreductaseAGGG subunit protein.
          Length = 160

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 15  RCARYFVSSNIF*LFVFVSIYLSSYI*NNTNNQYLHEFLYESV 143
           RC  YF+S+ I+  F +   Y S ++  +    YL EF  E +
Sbjct: 94  RCVTYFISAVIWAWFSYHMYYHSGHLLGHWYMPYLSEFTDEEL 136


>AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine
           receptor, class i protein21 protein.
          Length = 315

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 64  SSQFICLLTYKTIRIINIFTN 126
           +S FI ++ Y T+R+INI  N
Sbjct: 202 ASIFIAIIIYSTVRMINILKN 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,158,821
Number of Sequences: 27780
Number of extensions: 102232
Number of successful extensions: 285
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)