Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13d08
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    21   4.1  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    21   4.1  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    21   4.1  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    21   4.1  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   4.1  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   4.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   4.1  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   4.1  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   4.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   4.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   4.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   5.4  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    20   9.4  

>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 166 NIYNLNSYTDSYK 128
           N YN N+Y ++YK
Sbjct: 87  NNYNYNNYNNNYK 99


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 166 NIYNLNSYTDSYK 128
           N YN N+Y ++YK
Sbjct: 87  NNYNYNNYNNNYK 99


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 166 NIYNLNSYTDSYK 128
           N YN N+Y ++YK
Sbjct: 87  NNYNYNNYNNNYK 99


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 166 NIYNLNSYTDSYK 128
           N YN N+Y ++YK
Sbjct: 87  NNYNYNNYNNNYK 99


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 166 NIYNLNSYTDSYK 128
           N YN N+Y ++YK
Sbjct: 320 NNYNYNNYNNNYK 332


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 166 NIYNLNSYTDSYK 128
           N YN N+Y ++YK
Sbjct: 320 NNYNYNNYNNNYK 332


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 166 NIYNLNSYTDSYK 128
           N YN N+Y ++YK
Sbjct: 320 NNYNYNNYNNNYK 332


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 166 NIYNLNSYTDSYK 128
           N YN N+Y ++YK
Sbjct: 320 NNYNYNNYNNNYK 332


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 166 NIYNLNSYTDSYK 128
           N YN N+Y ++YK
Sbjct: 320 NNYNYNNYNNNYK 332


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 166 NIYNLNSYTDSYK 128
           N YN N+Y ++YK
Sbjct: 309 NNYNYNNYNNNYK 321


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 166 NIYNLNSYTDSYKNS 122
           N YN N+Y ++Y N+
Sbjct: 336 NNYNNNNYNNNYNNN 350


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 166 NIYNLNSYTDSYKN 125
           N YN N+Y ++Y N
Sbjct: 327 NNYNNNNYNNNYNN 340


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 50  LTICVRLNLSVFLHIKQ 100
           L++C RLNL++ L + +
Sbjct: 33  LSVCERLNLALSLSLTE 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,159
Number of Sequences: 438
Number of extensions: 1323
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)