Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13d07
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    29   0.84 
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    27   3.4  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    27   3.4  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   4.5  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   5.9  

>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +2

Query: 392 LSILYSGLCADEVKIVDGPSKYPSCT-CTREMKPVCGSDGITYNNDCLLNCATINDSRLG 568
           LS   SG CA    I+D  S+Y  C  C +   P  G   +   +D LLN  +   S+ G
Sbjct: 158 LSASDSGACAFARSILDWISRYRFCPGCGKRNIPTMGGTKLVC-SDVLLNDDSNCPSKKG 216

Query: 569 I-EYYGPCADKVIVV 610
           I  Y  P  D  +++
Sbjct: 217 INNYQYPRTDPCVIM 231


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -3

Query: 576 YSMPSLESLIVAQFKRQSLLYVIPSLPQTGFISRV 472
           YS+ SL  + V+Q  + S+++++P L    ++ ++
Sbjct: 228 YSITSLLQIPVSQLSQYSVIFIVPDLYDRVYVEKI 262


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 674 RGVCSSITGVVFRGSP 627
           RGVC+S+ G ++ GSP
Sbjct: 218 RGVCNSVEGCLYSGSP 233


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 149  YRNQRPVCGTDGKTYNNECLLDC 217
            Y N  P C TD +  +  C +DC
Sbjct: 955  YANDEPPCPTDEEIQHTLCTIDC 977


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
            homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -2

Query: 268  RAGSLISDP*TGIISGGTVEQALVVVCFPISSAHWSLVSIART-AWWICKCCNHL 107
            RA + + +   G+++G +  + L+V C  +S+A   LV+ +R  A +  K  +HL
Sbjct: 959  RATTTLIETADGVVNGTSSFEHLIVACNGVSAATAQLVAASRVKANFASKVQDHL 1013


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,749
Number of Sequences: 5004
Number of extensions: 54960
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)