Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13d04
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    28   0.95 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    26   3.8  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   6.7  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   6.7  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.8  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.8  

>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 415 KSPRDVVREAAAKGTHLTLAIKYLMEKNSWNEESA 519
           K+ + +V   A     +TL   YLM++N+WN E A
Sbjct: 123 KNAKVLVHCFAGISRSVTLVAAYLMKENNWNTEEA 157


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +2

Query: 134 KTLIVSIKSEFMIPNTRFM*YSSIGI*VCKCFDFVFSNFIIVFGTTHCMLVLVKLSK 304
           K+++  + +E + P   F  + ++ + +  C  FVF +  IVF +++ + + VK SK
Sbjct: 189 KSIVTILLNEVLHP---FYLFQAVSVLIWLCDSFVFYSCCIVFISSYSIFLSVKESK 242


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 280 HTMGSAENNNEIRKHKI 230
           HT+G+  N NE RKH I
Sbjct: 122 HTVGAHRNKNESRKHTI 138


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 412  EKSPRDVVREAAAKGTHLTLAIKYLMEKNSWNEE 513
            EK   D+   A    T +  A +YL + N WN E
Sbjct: 918  EKLEADIQEMAQKSRTEILEANEYLHQLNEWNSE 951


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 400 TILLFHFDLGPPFLFILHYYTYK 332
           T LLF    GPPF + L Y T K
Sbjct: 483 TALLFTHARGPPFRYSLKYLTKK 505


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 325 CFICMCNSAI*TKMEGLNQNEKVIWSCWEEKSPRDV 432
           C++C C++++ +   G  QN+ + W+  E  S +D+
Sbjct: 318 CYVCQCSNSVVSNAAG--QNKTIRWA-GESCSKQDI 350


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 613  NFA*YMENFKYFVFLTATGQSILSPLQ 533
            N   YME  + F  +T+ G S+ SP++
Sbjct: 1275 NLGNYMEALRLFEKVTSMGASVFSPIE 1301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,732
Number of Sequences: 5004
Number of extensions: 46013
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)