Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13d04
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23449-2|AAC24297.2|  375|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81526-3|CAB04261.2|  301|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.    28   6.2  
AL021480-5|CAJ21557.1|  432|Caenorhabditis elegans Hypothetical ...    27   8.2  
AL021480-4|CAA16329.2|  431|Caenorhabditis elegans Hypothetical ...    27   8.2  
AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U23449-2|AAC24297.2|  375|Caenorhabditis elegans Hypothetical
           protein K06A1.2 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 594 RTLNILFS*QQLDSPYFHLCNKPISGTFLIPTVFFHQIFDS 472
           ++L +L S   +  P+  +C K   G F  P  F +QIFD+
Sbjct: 61  KSLFLLLSLVTIYFPFRKVCMKHPKGVFTTPRHFLYQIFDA 101


>Z81526-3|CAB04261.2|  301|Caenorhabditis elegans Hypothetical
           protein F33H2.6 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 262 ENNNEIRKHKIKTFTYLNSNRTILHEAGIWYHKF 161
           E + ++RKH  K  +   ++ T  H  G+W+  F
Sbjct: 168 EKSFQVRKHLEKALSIFENDPTTWHILGVWHFSF 201


>Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical
           protein C47E8.7 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 445 AAKGTHLTLAIKYLMEKNSWNEESARDWFIAEVKVWTVQLLLRKQNI 585
           A K   + +A+  L + N  N ES + W  A +K W V   +R   I
Sbjct: 621 ARKAELVAVAVNRLAKLNMDNGESLKTWRFANMKKWHVNWEIRHLKI 667


>AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 445 AAKGTHLTLAIKYLMEKNSWNEESARDWFIAEVKVWTVQLLLRKQNI 585
           A K   + +A+  L + N  N ES + W  A +K W V   +R   I
Sbjct: 621 ARKAELVAVAVNRLAKLNMDNGESLKTWRFANMKKWHVNWEIRHLKI 667


>AL021480-5|CAJ21557.1|  432|Caenorhabditis elegans Hypothetical
           protein Y39E4A.3b protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 427 DVVREAAAKGTHLTLAIKYLMEKNSWNEESARDW 528
           D V+    K   +T   KY+ E+  WNEE   +W
Sbjct: 333 DEVQTWGDKDHPITRFKKYITERGWWNEEKEMEW 366


>AL021480-4|CAA16329.2|  431|Caenorhabditis elegans Hypothetical
           protein Y39E4A.3a protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 427 DVVREAAAKGTHLTLAIKYLMEKNSWNEESARDW 528
           D V+    K   +T   KY+ E+  WNEE   +W
Sbjct: 332 DEVQTWGDKDHPITRFKKYITERGWWNEEKEMEW 365


>AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical
           protein C05C8.2 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 295 TIKNIYLVTRCFICMCNSAI*T--KMEGLNQNEKVIWSCWEEKSP 423
           T+K + L+T+C++C+    +     + GL Q  +++  C +   P
Sbjct: 176 TLKALELLTQCYVCVQGGTVCAVGPLAGLKQINQIVTDCMKNIHP 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,823,768
Number of Sequences: 27780
Number of extensions: 246694
Number of successful extensions: 481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)