Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13d04
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.2  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   5.5  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = +1

Query: 340 CNSAI*TKMEGLNQNEKVI--WSCWEEKSPRDVVREAAAKGTHLTLAIKYLMEKNSWNEE 513
           C          L  + KVI  W   +     D  R+AA +       + YL++ + W ++
Sbjct: 14  CQGVTDIHSRNLTNSLKVIYEWKYIDYDFGSDEKRQAAIQSGDYNYTMNYLLDTDQWGDK 73

Query: 514 S 516
           +
Sbjct: 74  T 74


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 171 YQIPASCNIVLLEFK 215
           Y IPA C +V+  FK
Sbjct: 432 YTIPAGCTVVIGTFK 446


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 361 KMEGLNQNEKVIWSCWEEKSPRD 429
           + + LNQN+ +IW+      P+D
Sbjct: 11  RKKNLNQNQMMIWALDCSIKPKD 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,229
Number of Sequences: 438
Number of extensions: 3022
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)