Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13d03
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    31   0.20 
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    29   0.62 
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    27   3.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.7  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    25   7.7  

>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 533 EKCLSDKLSESFLDHSKRREYFYLTWTLFIFYLSK 429
           +KCL D +SES + +SKR++    T  LF   L K
Sbjct: 613 QKCLQDDISESLMQNSKRKDSALDTNQLFELELKK 647


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 506 ESFLDHSKRREYFYLTWTLFIFYLSKTFGQQLY--KTFKSHARRYYLFYVTSNL 351
           +S+L   K  E  YLTW++ I  LS  FG   Y  +   S A+  +  Y+   L
Sbjct: 239 QSYLSF-KNSEMMYLTWSVMIGGLSSVFGDPGYSQRAIASDAKSVFQGYLMGGL 291


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 45  NDKKY*VIKIVTCVSEGHILIWCFRTHRFYNECEKRQRFLL 167
           ND  Y    +V+C  +G I+ W  RTH    + E  Q+ +L
Sbjct: 238 NDSPY---NLVSCSRDGSIIFWDMRTHGITIDGEHFQKPVL 275


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -1

Query: 539 IGEKCLSDKLSESFLDHSKRREYFYLTWTLFIFYLSKTFGQQLYKTFKSHARRYYLFY 366
           + +  + +KL E +L +S         W  FI     T   Q Y    S A RY +FY
Sbjct: 501 VDKHLIRNKLCEKYLFYSN------FIWISFIVAQFVTLCTQTYDQTSSTANRYLIFY 552


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 422 GQQLYKTFKSHARRYYLFYVTSNL 351
           GQ++   FKS+ R+Y+L Y+   +
Sbjct: 325 GQEIVYAFKSYYRKYWLNYMLEEI 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,996
Number of Sequences: 5004
Number of extensions: 56404
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)