Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13d03
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0851 - 25363870-25364006,25364586-25364889,25365232-25365975     30   2.0  
02_01_0541 - 3950336-3950353,3950660-3951061,3951174-3951431,395...    29   3.4  
11_05_0095 + 19009866-19010159,19010255-19010448,19012183-19012582     28   6.0  

>06_03_0851 - 25363870-25364006,25364586-25364889,25365232-25365975
          Length = 394

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 497 LDHSKRREYFYLTWTLFIFYLSKTFG 420
           LD S     F L WTLF++ L KT G
Sbjct: 367 LDRSYLHTIFMLEWTLFLWLLGKTIG 392


>02_01_0541 -
           3950336-3950353,3950660-3951061,3951174-3951431,
           3951554-3951754,3951861-3952203,3952286-3952344,
           3952757-3953082,3953283-3953745,3954180-3954794,
           3955600-3955896
          Length = 993

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 464 NKSIRAFSNDPEMIPKVCHL---NIFLQFHISGCSTIFKKI*QFYLMKMICSFCFFNRKR 634
           N  IRA SND +   K+ HL   ++FL  H        ++I  F++ +M+C    F R  
Sbjct: 277 NPYIRAASNDAQEASKMLHLLCSSLFLS-HTDSPLVPLQQIPVFFI-RMVCPRIHFTRSL 334

Query: 635 LLVMNXP 655
           LL+   P
Sbjct: 335 LLMHLGP 341


>11_05_0095 + 19009866-19010159,19010255-19010448,19012183-19012582
          Length = 295

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 102 LIWCFRTHRFYNECEKRQRF 161
           L W  +TH  YN C+ R+R+
Sbjct: 263 LAWVRKTHTIYNYCDDRERY 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,127,896
Number of Sequences: 37544
Number of extensions: 258404
Number of successful extensions: 402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)