Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13d03
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068716-8|AAC17749.1|  554|Caenorhabditis elegans Innexin prote...    30   1.3  
Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical ...    29   3.1  
U80953-4|AAB52555.2|  420|Caenorhabditis elegans Dachsund transc...    28   5.4  
AF101305-4|AAR85910.1|  342|Caenorhabditis elegans Serpentine re...    28   5.4  
Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AC024751-4|AAK21505.1|  425|Caenorhabditis elegans Hypothetical ...    28   7.1  
AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical ...    27   9.4  
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AF068716-8|AAC17749.1|  554|Caenorhabditis elegans Innexin protein
           4 protein.
          Length = 554

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 413 LYKTFKSHARRYYLFYVTSNL*YCKLFLIETLYTNT*VIIVNRYL 279
           L++ FK    RYY  YVT      K+  +  + TN  +++VN++L
Sbjct: 216 LHRVFKCFNMRYYESYVTGMYLATKIMYVGNILTN--LVLVNKFL 258


>Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.10 protein.
          Length = 679

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -1

Query: 527 CLSDKLSESFLDHSKRREYFYLTWTLFIFYLSKTFGQQLYKTFKSHARRYYLFYVTSNL* 348
           C  +K    F +  K      LT  L    L+   G  ++KTFK+HA+   + Y  SN  
Sbjct: 443 CYPNKAEHGFCEFDKSNLTGDLTVFLVGNSLTPNLGSLVFKTFKNHAK---VMYKYSNS- 498

Query: 347 YCKLFLI 327
           YC++  +
Sbjct: 499 YCEILTV 505


>AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical
           protein W04B5.2 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 521 LNIFLQFHISGCSTIFKKI*QFYLMKMICSFCFFNRKRLLVMNXP*RD 664
           + +F+     GCS         Y  +++ +FCFF+   LLV+  P RD
Sbjct: 2   VGVFISRGSDGCSPTDLLSFYIYPGRLVVAFCFFSSHFLLVLWIPLRD 49


>U80953-4|AAB52555.2|  420|Caenorhabditis elegans Dachsund
           transcription factor homologprotein 1, isoform a
           protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 470 SIRAFS-NDPEMIPKVCHLNIFLQFHISGCSTIFKKI*QFYLMKMICS 610
           ++ AF  N  EMI       +FL+  + G  T++ K+ + Y+  M+C+
Sbjct: 93  NVAAFDINGKEMICLPQVYEVFLKNMVGGLHTVYTKLKRLYIHPMVCN 140


>AF101305-4|AAR85910.1|  342|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 2 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
 Frame = -1

Query: 515 KLSESFLDHSKRREYFYLTWTLFIFYLSKTFGQQLYKTFKSHARRYYLFYVTSNL*YCKL 336
           +LSE+    +K R    +TWT   +  + TFG  L+    S+A  + +  +   L    L
Sbjct: 229 QLSENLQTLTKFRIVSAVTWTFVTYNAAATFGVYLFSDAWSYAEEFAVIEIVHCLPLYYL 288

Query: 335 FLIETL------YTNT*VIIVNRY-LYYYN 267
            L   L      + N  +I VN Y   Y+N
Sbjct: 289 ILAACLIIEDKKHRNQNIIKVNNYEPQYFN 318


>Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical
           protein Y57G11C.6 protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 137 IVKSMRSETPN*NMSFTNTCHYFYHLIFFI 48
           IVKS+RS+ P    SF   C  +  L++FI
Sbjct: 405 IVKSIRSQRPRAVDSFCQYCSLYISLLYFI 434


>AC024751-4|AAK21505.1|  425|Caenorhabditis elegans Hypothetical
           protein Y18H1A.1 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 137 IVKSMRSETPN*NMSFTNTCHYFYHLIFFI 48
           IVKS+RS+ P    SF   C  +  L++FI
Sbjct: 348 IVKSIRSQRPRAVDSFCQYCSLYISLLYFI 377


>AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical
           protein Y79H2A.3b protein.
          Length = 1271

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 236 IFKKNDIFISQYITTYMH 183
           +F KN IF++Q+I +Y H
Sbjct: 518 VFSKNPIFVNQHIRSYAH 535


>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
           protein Y79H2A.3a protein.
          Length = 2129

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 236 IFKKNDIFISQYITTYMH 183
           +F KN IF++Q+I +Y H
Sbjct: 518 VFSKNPIFVNQHIRSYAH 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,349,191
Number of Sequences: 27780
Number of extensions: 303896
Number of successful extensions: 593
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)