Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13c20
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    52   5e-09
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.64 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.9  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 52.0 bits (119), Expect = 5e-09
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
 Frame = +2

Query: 347 KESRCMLITYSIFMVILVAVKIYLAIVVFGFL--SDVTSTITSWVTTAFN----TSSLRD 508
           +ES CM IT++ F++ ++ V+I +A+  F  +   D    I+      FN     S  +D
Sbjct: 75  RESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLNSESKD 134

Query: 509 VYHVMEALFNCCGTTGPSSYDGILSQLPPSCCASPVDNTFYAPNAFP-GC 655
               ++    CCG    S Y+     +P SCC SP +NT    N++  GC
Sbjct: 135 FIDFIQKNLQCCGVHSLSDYND--KPIPASCCNSPENNTCSISNSYTNGC 182



 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 56  MCCPEFIAKYVLFIANLVFS 115
           M C   + KY+LFI N VF+
Sbjct: 1   MSCGMGMIKYLLFIFNFVFA 20


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 67  RVYS*ICTLHRQPCFFGSTVT 129
           ++Y+  C LHR  C  GS++T
Sbjct: 123 KIYANHCELHRAACHSGSSLT 143


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 418  GYRGIRFSVRRHQHNNQLGDHSVQHEQLKRRISRHGSSIQ 537
            G +G    +++   +NQ     +Q +QLKR ++    SIQ
Sbjct: 1041 GLQGQTIFIKQSPSSNQ--SQQIQQQQLKRVVTNQQQSIQ 1078


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 460 CAGDVGQKTEYH 425
           C+G+V   TEYH
Sbjct: 500 CSGEVASLTEYH 511



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 487 QHEQLKRRISRHGSSIQLLWNNRPLFVRRYLVTAA 591
           Q +Q +++  +  SS  L+  N P    RYL  AA
Sbjct: 800 QQQQQQQQQQQQSSSDYLMVGNSPASSPRYLSAAA 834


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -2

Query: 283 YWQSVDW 263
           YWQ VDW
Sbjct: 573 YWQGVDW 579


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 634 PQRVPRLHH 660
           PQ +PR+HH
Sbjct: 507 PQHLPRIHH 515


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 634 PQRVPRLHH 660
           PQ +PR+HH
Sbjct: 422 PQHLPRIHH 430


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 634 PQRVPRLHH 660
           PQ +PR+HH
Sbjct: 741 PQHLPRIHH 749


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 481  SVQHEQLKRRISRHGSSIQLLWNNRPL 561
            +V  ++ KRR+ ++G  + +   N PL
Sbjct: 1084 TVSQQKQKRRMVKYGKLVMIHEENAPL 1110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,597
Number of Sequences: 438
Number of extensions: 4120
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)