Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13c19
(408 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 37 0.006
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 33 0.068
SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 33 0.068
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08) 31 0.27
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.63
SB_58982| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.84
SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.84
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 29 1.5
SB_16910| Best HMM Match : EGF (HMM E-Value=0) 29 1.9
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 1.9
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21) 29 1.9
SB_12157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 28 2.6
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096) 28 2.6
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 27 4.5
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31) 27 4.5
SB_544| Best HMM Match : PDZ (HMM E-Value=0.15) 27 5.9
SB_17383| Best HMM Match : LytTR (HMM E-Value=2.4) 27 7.8
>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1120
Score = 37.1 bits (82), Expect = 0.006
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 13/113 (11%)
Frame = +2
Query: 56 CAMCILVYGNSEDDFCEIDSIEQEDP---CRREGGLCTVAEDCPSD----------IRAR 196
C +C Y ++ FC S+ D C+ +G C A+ C + ++ +
Sbjct: 508 CEICKCAYAPAKPGFCGSGSLSCSDAQTKCQYDGD-CAGADKCCNTQCGKICTSAVLKEK 566
Query: 197 TGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEG 355
TG CPK++ D + C + C +C S G C ++ CPEG
Sbjct: 567 TGFCPKRRVDHVGVCVNYCGTDGDC-AGDKKCCSNG-CGRTCTSPVRQACPEG 617
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 33.5 bits (73), Expect = 0.068
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Frame = +2
Query: 80 GNSEDDFCEIDSIEQEDPCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVK 259
G E C+ + ++ C+ EG T C + R T +C + +D C G
Sbjct: 406 GTDETRMCKDEGTDETRMCKGEGSDKT--GKCEDEGRDETRMCKGKGRDETRMCKGEGTD 463
Query: 260 ETR-CRKHGGE----CFSKGYCSQSLIYEEASD 343
ETR C+ G + C +G + +E +D
Sbjct: 464 ETRMCKSEGTDETRMCKDEGSDETRMCKDEGTD 496
>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
Length = 878
Score = 33.5 bits (73), Expect = 0.068
Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Frame = +2
Query: 134 CRREGGLCTVAEDCPSDIRARTGLCPKQQK----DGIECC---YGVSVKETRCRKHGG-- 286
C + C C + G CP DG+ CC Y RC K
Sbjct: 197 CPDKASKCPDGNTCCKLSSDQYGCCPLPNAMCCDDGVHCCPNGYTCDTSSGRCSKGDSVL 256
Query: 287 ECFSKGYCSQS---LIYEEASDCPEGNDCCIL 373
F K Q + + AS+CP+GN CC L
Sbjct: 257 PLFKKTPAKQLKNVVCPDGASECPDGNTCCKL 288
Score = 31.1 bits (67), Expect = 0.36
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Frame = +2
Query: 134 CRREGGLCTVAEDCPSDIRARTGLCPKQQK----DGIECC---YGVSVKETRCRKHGG-- 286
C E C C + G CP DG+ CC Y RC K
Sbjct: 422 CPDETSQCPDGNTCCKLSSGQYGCCPLPNAVCCDDGVHCCPNGYTCDTSSGRCNKGDSVL 481
Query: 287 ECFSKGYCSQ--SLIYEEA-SDCPEGNDCCIL 373
F K Q +++ ++CP+GN CC L
Sbjct: 482 PLFKKTPAKQLKNVVCPGGEAECPDGNTCCKL 513
Score = 28.7 bits (61), Expect = 1.9
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 12/85 (14%)
Frame = +2
Query: 155 CTVAEDCPSDIRARTGLCPKQQK----DGIECC---YGVSVKETRCRKHGG--ECFSKGY 307
C C + G CP DG+ CC Y + C + F K
Sbjct: 354 CPDGNTCCKLSSGQYGCCPLPNAVCCDDGVHCCPNGYTCNSSSGTCSEGDSVLPLFKKTP 413
Query: 308 CSQS---LIYEEASDCPEGNDCCIL 373
Q + +E S CP+GN CC L
Sbjct: 414 AKQLKNVVCPDETSQCPDGNTCCKL 438
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 296 SKGYCSQSLIYEEASDCPEGNDCCIL 373
+K ++ ++AS CP+GN CC L
Sbjct: 188 NKNILGTTVCPDKASKCPDGNTCCKL 213
Score = 27.9 bits (59), Expect = 3.4
Identities = 23/85 (27%), Positives = 28/85 (32%), Gaps = 12/85 (14%)
Frame = +2
Query: 155 CTVAEDCPSDIRARTGLCPKQQK----DGIECC---YGVSVKETRCRKHGG--ECFSKGY 307
C C + G CP DG+ CC Y C K F K
Sbjct: 279 CPDGNTCCKLSSGQYGCCPLPNAVCCDDGVHCCPNGYTCDTASGTCNKGDSVLPLFKKTP 338
Query: 308 CSQS---LIYEEASDCPEGNDCCIL 373
Q + + S CP+GN CC L
Sbjct: 339 AKQLKNVVCPDGTSQCPDGNTCCKL 363
>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
Length = 1907
Score = 31.5 bits (68), Expect = 0.27
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 248 VSVKETRCRKHGGECFSKGYCS--QSLIYEEASDCPEGNDC 364
V+V E HG ECFS GYC+ Q L E G C
Sbjct: 523 VTVSENELLWHGSECFSIGYCAYKQDLFMEATCLMSVGCQC 563
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 30.3 bits (65), Expect = 0.63
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Frame = +2
Query: 149 GLCTVAEDCPSDIRARTGLCPKQQK-DGIECCYGVSVKETRCRKHGGECFSKGYCSQSLI 325
G C+ +C D R C G EC +K C G ECF G+C +
Sbjct: 117 GNCSFHGECVID-RGGNATCRCYTGFSGSECQLASCIKVKNCSNRG-ECFESGFCKCDVG 174
Query: 326 YEEASDCPEGNDC 364
Y DC N C
Sbjct: 175 Y-TGPDC-SNNSC 185
>SB_58982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 29.9 bits (64), Expect = 0.84
Identities = 22/87 (25%), Positives = 29/87 (33%)
Frame = +2
Query: 86 SEDDFCEIDSIEQEDPCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKET 265
S D +C S + CR+ C ED D CPK K +C +
Sbjct: 377 SHDQYCVYASYFMKRNCRKTCKYCEGCEDALED-------CPKYMKSQEQCNLFSGMARK 429
Query: 266 RCRKHGGECFSKGYCSQSLIYEEASDC 346
C + G C S S+ S C
Sbjct: 430 YCARTCGFCCSDRIPDCSIFIRNPSQC 456
>SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 29.9 bits (64), Expect = 0.84
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 143 PCGTDPLVQWNLFHRNHLHCFRKLKCTLHK 54
P DPL++W LF N L C++ + ++K
Sbjct: 458 PSKFDPLLKWELFRYNELDCWQTILKRMYK 487
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = -2
Query: 374 LKYNNHSLRDSLKLLHISKIDCSSLSRNILRRASDIWSLLRTLRNSIR 231
L+ +N+ +++ +L+H +++ SSL N+ R +S + L L N+ R
Sbjct: 347 LERSNYRIKELEELVHQHEVENSSLRNNLTRTSSQVTKLKCELDNAQR 394
>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
Length = 1552
Score = 28.7 bits (61), Expect = 1.9
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +2
Query: 143 EGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSK----GYC 310
EG C +++DC S G C + G +C + C ++ EC ++ G
Sbjct: 429 EGKTCQLSKDCHSQPCQNAGTCINTE-TGFQCRCAHGWEGPTCDQNTNECAARPCINGRK 487
Query: 311 SQSLIYEEASDCPEG 355
LI + A +C EG
Sbjct: 488 CIDLIGDYACECLEG 502
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 206 CPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGNDC 364
CP + C G S ++ + H +C S +C ++ SDCP G+ C
Sbjct: 1971 CPIGSARPLGCPAG-SYQDNKGMSHCKDCPSGYFCHENSTTYVTSDCPPGSYC 2022
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/51 (21%), Positives = 21/51 (41%)
Frame = +2
Query: 212 KQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGNDC 364
+ + D +C G + + G+C YC + + CP+G+ C
Sbjct: 2179 RNETDCRDCTQGWFCDDLGLEEPKGQCMQGYYCDGRATHSQQHPCPKGHIC 2229
>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
Length = 759
Score = 28.7 bits (61), Expect = 1.9
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Frame = +2
Query: 134 CRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYC- 310
CR GG C C R+ G C + + G SV RCR G C + C
Sbjct: 605 CRSGGGTCVTRIRC----RSGGGTCVTRIR--CRSGEGTSVTSLRCRSGEGTCVTSIRCR 658
Query: 311 SQSLIYEEASDCPEGNDCCI 370
S + C G + C+
Sbjct: 659 SGEETCVTSISCRSGEETCV 678
>SB_12157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 194 RTGLCPKQQKDGIECCYGVSVKETRC 271
R P Q +CC+GVS++ RC
Sbjct: 326 RLSTAPLVQSGSTDCCFGVSLRINRC 351
>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
Length = 269
Score = 28.3 bits (60), Expect = 2.6
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Frame = +2
Query: 155 CTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEE 334
C A DCP ++ +C K G +C C GG F + C ++ +
Sbjct: 134 CKAASDCPFGLQCCRSVC----KVGRDCVGSPCSSRADC---GGP-FEQSCCGHRCVFGK 185
Query: 335 A---------SDCPEGNDCC 367
+ SDC EG CC
Sbjct: 186 SCYGRSCDLTSDCSEGESCC 205
>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
Length = 191
Score = 28.3 bits (60), Expect = 2.6
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Frame = +2
Query: 155 CTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEE 334
C A DCP ++ +C K G +C C GG F + C ++ +
Sbjct: 56 CKAASDCPFGLQCCRSVC----KVGRDCVGSPCSSRADC---GGP-FEQSCCGHRCVFGK 107
Query: 335 A---------SDCPEGNDCC 367
+ SDC EG CC
Sbjct: 108 SCYGRSCDLTSDCSEGESCC 127
>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2429
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 310 AVAFRETFSAVLPTSGLFYGHSVTAFDSVFLLLRTESSS--GSDIRWTVLSHST 155
+V F F A + L +G + TA+ +V + RT+ S G D W L S+
Sbjct: 2127 SVVFLVAFIAFAQVAFLAFGPTTTAYSTVVRVFRTQFSMFVGGDPDWEALKSSS 2180
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 266 RCRKHGGECFSKGYCSQSLIYEEASDCPEGND 361
+C KH C S S S + + +DC +G+D
Sbjct: 3167 QCAKHQYRCASGRCISASWVCDHVNDCGDGSD 3198
>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
Length = 870
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 402 FSKITVYCYTKIQQSFPSGQSEASSYIKD*LQ*PFEKHSPP 280
F ++ +KI +F S S+ +S++++ LQ E H PP
Sbjct: 706 FDRVDDTDVSKIYDTFISYSSQDASWVRETLQRTLESHVPP 746
>SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)
Length = 742
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -1
Query: 186 ISDGQSSATVHKPPSLRHGSSCSMESISQKSSS 88
+ + +S++ P + RH S C +E++S+KSSS
Sbjct: 431 LGEFRSTSDPDIPKTERHLSGCPIETLSRKSSS 463
>SB_17383| Best HMM Match : LytTR (HMM E-Value=2.4)
Length = 536
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 143 EGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGG 286
+GG AE+C S A G P++ ++G CY R ++ G
Sbjct: 363 DGGSLRPAENCGSPRLAENGGSPQRAENGGSPCYKQKCLSARDEENNG 410
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,381,034
Number of Sequences: 59808
Number of extensions: 289901
Number of successful extensions: 885
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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