Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13c19
(408 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021471-1|CAA16295.1| 241|Caenorhabditis elegans Hypothetical ... 33 0.060
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 33 0.10
AC006633-3|AAK68375.1| 227|Caenorhabditis elegans Hypothetical ... 31 0.32
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 31 0.42
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 31 0.42
AC024839-1|AAF60832.2| 232|Caenorhabditis elegans Thaumatin fam... 30 0.56
Z68159-3|CAD89733.1| 351|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z68159-2|CAD89732.1| 354|Caenorhabditis elegans Hypothetical pr... 29 1.3
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra... 29 1.7
Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical pr... 28 2.3
AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical ... 28 2.3
U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z30423-10|CAA83014.1| 216|Caenorhabditis elegans Hypothetical p... 27 5.2
U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical pr... 27 5.2
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph... 27 5.2
Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical pr... 27 6.9
U58751-9|AAB00660.1| 133|Caenorhabditis elegans Hypothetical pr... 27 6.9
AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical ... 27 6.9
AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily a... 26 9.1
>AL021471-1|CAA16295.1| 241|Caenorhabditis elegans Hypothetical
protein Y17D7C.1 protein.
Length = 241
Score = 33.5 bits (73), Expect = 0.060
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 5 GRVQN*SEHVIMKFLLFCAMCILVYGN 85
G V+ S+H+ FLLFC C +VYG+
Sbjct: 82 GLVETLSQHICRHFLLFCLQCRVVYGD 108
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
ZC84.1 protein.
Length = 1556
Score = 32.7 bits (71), Expect = 0.10
Identities = 24/82 (29%), Positives = 33/82 (40%)
Frame = +2
Query: 101 CEIDSIEQEDPCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKH 280
CE E P + GG C C S+ GLC + K G E C V +C+++
Sbjct: 1196 CEDAKCECRPPLKAVGGFCQEEIQCSSNQVLHNGLCHNKAKLG-EACLTV----RQCQEN 1250
Query: 281 GGECFSKGYCSQSLIYEEASDC 346
G C + I E+A C
Sbjct: 1251 SGCIEGSCECKKGFI-EKAGKC 1271
>AC006633-3|AAK68375.1| 227|Caenorhabditis elegans Hypothetical
protein F35B3.4 protein.
Length = 227
Score = 31.1 bits (67), Expect = 0.32
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 173 CPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQ 316
CP A C Q +D +CCY SV T G +CF+ +C Q
Sbjct: 113 CPMQAAADIQYCAAQGQDHTDCCYRNSVGTTLA---GNKCFT--FCDQ 155
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.7 bits (66), Expect = 0.42
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 167 EDCPSDIRARTGLCPKQ--QKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEAS 340
++CP ++A G CPK KDG CY + C + G+C S+G + Y A
Sbjct: 12962 DECPCKVKAHGGRCPKGYIAKDG--QCYDID----ECETNNGQC-SEGCVNTPGSYYCA- 13013
Query: 341 DCPEG 355
CP G
Sbjct: 13014 -CPHG 13017
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.7 bits (66), Expect = 0.42
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 167 EDCPSDIRARTGLCPKQ--QKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEAS 340
++CP ++A G CPK KDG CY + C + G+C S+G + Y A
Sbjct: 12962 DECPCKVKAHGGRCPKGYIAKDG--QCYDID----ECETNNGQC-SEGCVNTPGSYYCA- 13013
Query: 341 DCPEG 355
CP G
Sbjct: 13014 -CPHG 13017
>AC024839-1|AAF60832.2| 232|Caenorhabditis elegans Thaumatin family
protein 5 protein.
Length = 232
Score = 30.3 bits (65), Expect = 0.56
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Frame = +2
Query: 107 IDSIEQEDPCRREGGLCTVAED-CPSDIRARTGLCPKQQKDGI-------ECCYGVSVKE 262
ID E CRR GG D CP D+ R K G ECC G
Sbjct: 130 IDPYGGEGDCRRAGGCFKNINDFCPGDLAVRKDGRTVGCKSGCVAYNNDQECCRGAFGTP 189
Query: 263 TRCRKHGGECFSKGYC--SQSLIYEEAS 340
+CR+ K C + S Y++A+
Sbjct: 190 DKCRQSRTAMLFKDACPTAYSYAYDDAT 217
>Z68159-3|CAD89733.1| 351|Caenorhabditis elegans Hypothetical
protein C33D9.3b protein.
Length = 351
Score = 29.1 bits (62), Expect = 1.3
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = -1
Query: 204 SPVLALISDGQSSATVHKPPSLRHGSSCSMESISQKSSSLFP*TKMHIAQNNKNFMMTC 28
SP ++ SD S V P SS S +S S KSS L T++ ++ N+N C
Sbjct: 55 SPTVSPPSDTSSPPNVIGCPETTSFSSTSRKSKSSKSSPLASPTRLVASELNRNTYSDC 113
>Z68159-2|CAD89732.1| 354|Caenorhabditis elegans Hypothetical
protein C33D9.3a protein.
Length = 354
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = -1
Query: 204 SPVLALISDGQSSATVHKPPSLRHGSSCSMESISQKSSSLFP*TKMHIAQNNKNFMMTCS 25
SP ++ SD S V P SS S +S S KSS L T++ ++ N+N T S
Sbjct: 55 SPTVSPPSDTSSPPNVIGCPETTSFSSTSRKSKSSKSSPLASPTRLVASELNRNVSKTYS 114
>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 12
protein.
Length = 1022
Score = 28.7 bits (61), Expect = 1.7
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = -3
Query: 307 VAFRETFSAVLPTSGLFYGHSVTAFDSVFLLLRTESSSGSDIRWTVLSHSTQTTF--PAA 134
V RE + + LFY V D LL SS G + +W + T ++ P +
Sbjct: 43 VKLRELVGSSANDAALFYLECVCHADETERLLNRGSSVGKEKKWKKVKRKTSSSVAPPLS 102
Query: 133 R-ILLFNGIYFTEIIFTVSVN 74
R I G+ ++I T+ V+
Sbjct: 103 RTISSLPGVSSPDVIQTIDVS 123
>Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical
protein T22H2.6b protein.
Length = 345
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 239 CYGVSVKET--RCRKHGGECFSKGYCSQSLIYEEASDCPEGNDCCIL 373
C G K + +K + + ++ + ++AS CP+G+ CC+L
Sbjct: 149 CIGADEKHVPMKKKKPARKTVERNQFNEVVCPDKASKCPDGSTCCLL 195
>Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical
protein T22H2.6a protein.
Length = 358
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 239 CYGVSVKET--RCRKHGGECFSKGYCSQSLIYEEASDCPEGNDCCIL 373
C G K + +K + + ++ + ++AS CP+G+ CC+L
Sbjct: 149 CIGADEKHVPMKKKKPARKTVERNQFNEVVCPDKASKCPDGSTCCLL 195
>Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical
protein F23B12.5 protein.
Length = 507
Score = 28.3 bits (60), Expect = 2.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 215 QQKDGIECCYGVSVKETRCRKH--GGECFSKGYCSQSLIYEEASDCPEGNDCCILV 376
Q+K+G + G + E K G E +GY ++ LI E + D P G CI+V
Sbjct: 98 QKKEGDQLSEGDLLCEIETDKATMGFETPEEGYLAKILIQEGSKDVPIGKLLCIIV 153
>AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical
protein F39C12.4 protein.
Length = 103
Score = 28.3 bits (60), Expect = 2.3
Identities = 22/70 (31%), Positives = 27/70 (38%)
Frame = +2
Query: 101 CEIDSIEQEDPCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKH 280
C IE E C EG CT E S + + +CP+ + C G H
Sbjct: 36 CSSCGIENEGVCISEGRCCTNEECFMSTECSYSAVCPE-----LFCKIG---------HH 81
Query: 281 GGECFSKGYC 310
G C KGYC
Sbjct: 82 PGYCMKKGYC 91
>U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical
protein C42D4.3 protein.
Length = 255
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 167 EDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQ 316
+ CP A C Q KD CC +V T G +CF+ +C Q
Sbjct: 118 DSCPMQAAADIQFCAAQGKDHTACCARNAVGTTLA---GNKCFT--FCDQ 162
>Z30423-10|CAA83014.1| 216|Caenorhabditis elegans Hypothetical
protein T20G5.12 protein.
Length = 216
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 164 AEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQS 319
+ +CP + C Q KD +CC V T G +C + +C Q+
Sbjct: 120 SSECPIEFLPEMQFCAAQGKDHSQCCSQSQVDATTA---GSKCLT--FCDQT 166
>U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical
protein F46F11.7 protein.
Length = 320
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = +2
Query: 143 EGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRK 277
EG ++ DC + G C + G+ C G ++ +C K
Sbjct: 86 EGSARSIVSDCGKHGKCVNGQCILNRCQGVSCDEGSMCRDGKCEK 130
>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll
(drosophila) family protein 1 protein.
Length = 1221
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 401 FRR*PFIVTLKYNNHSLRDSLKLLHISKIDCSSLSRNILR 282
F + P + L +N+SL D ++LH + + SLS N LR
Sbjct: 852 FEKLPNLKYLTLHNNSLEDIPQVLHSTALSKISLSSNPLR 891
>Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical
protein F53F8.4 protein.
Length = 253
Score = 26.6 bits (56), Expect = 6.9
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = +2
Query: 167 EDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSL 322
+ CP D C Q +D +CC V T G +C S +C Q L
Sbjct: 172 DPCPLDAMKEMQFCAAQGRDHRDCCARNGVTTTLA---GPKCLS--FCDQRL 218
>U58751-9|AAB00660.1| 133|Caenorhabditis elegans Hypothetical
protein C07G1.6 protein.
Length = 133
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 162 TVHKPPSLRHGSSCSMESISQKSSSLFP*TKMHIAQNNKNFMM 34
T H PP +R S+ + S S +SS P K H + N ++
Sbjct: 48 TAHTPPLIRASSTSASASASTSTSSSRP--KKHYLEKNMEHLL 88
>AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical
protein Y39G8B.7 protein.
Length = 179
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +2
Query: 206 CPKQQKDGI--ECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEE 334
C K G CCY +E C K G C S G C + +E+
Sbjct: 124 CASWAKRGFCTNCCYSCQDRERYCAKTCGFC-SAGTCKECNSFEK 167
>AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform a protein.
Length = 851
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -2
Query: 407 FFFRR*PFIVTLKYNNHSLRDSLKLLHISKIDCSSLSRNILRRASDIWSLLRTLRN 240
FF R+ ++ K S ++S L+ S C+S S NI++ + + ++T N
Sbjct: 742 FFVRKLNLKISNKKKWKSKKNSTNLVFRSSKTCTSTSTNIIKTSGSTETTVKTKEN 797
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,046,487
Number of Sequences: 27780
Number of extensions: 221852
Number of successful extensions: 688
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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