Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13c19
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.58 
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   1.3  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   1.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   2.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.4  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    20   9.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
 Frame = +2

Query: 128 DPCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFS-KG 304
           D   + G L         D R + G  P+QQ+   E C     + +    +   C   KG
Sbjct: 153 DELSQPGSLNGYGSSDGCDARKKKGPTPRQQE---ELCLVCGDRASGYHYNALTCEGCKG 209

Query: 305 YCSQSLIYEEASDCPEGNDC 364
           +  +S+       C  GN+C
Sbjct: 210 FFRRSITKNAVYQCKYGNNC 229


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 47  LLFCAMCILVYGNSEDDFCEIDSIEQEDPCRR 142
           LLF AM  ++    ED+F  ++  E E+   R
Sbjct: 9   LLFMAMVAIMAAPVEDEFEPLEHFENEERADR 40


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 47  LLFCAMCILVYGNSEDDFCEIDSIEQEDPCRR 142
           LLF AM  ++    ED+F  ++  E E+   R
Sbjct: 9   LLFMAMVAIMAAPVEDEFEPLEHFENEERADR 40


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/31 (25%), Positives = 13/31 (41%)
 Frame = +2

Query: 200 GLCPKQQKDGIECCYGVSVKETRCRKHGGEC 292
           G+C +  +     C G S ++  C K    C
Sbjct: 77  GICAEGMQCSCNKCIGCSAEKFECSKTSNPC 107


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +3

Query: 204 SVLSSKKTESNAVTECP*KRPDVGSTAENVSRKATAVNL*YMKKLQTV 347
           ++ +  +TESNA +     R   G+T E +  +    N+   ++ Q++
Sbjct: 222 TIENESETESNASSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSL 269


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 390 TVYCYTKIQQSFPSGQSEA 334
           T  C++ +  + PSGQ++A
Sbjct: 75  TAGCHSNLLSTSPSGQNKA 93


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 390 TVYCYTKIQQSFPSGQSEA 334
           T  C++ +  + PSGQ++A
Sbjct: 75  TAGCHSNLLSTSPSGQNKA 93


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/31 (22%), Positives = 13/31 (41%)
 Frame = +2

Query: 230  IECCYGVSVKETRCRKHGGECFSKGYCSQSL 322
            + C  G +  ET+ + +   C  K   +  L
Sbjct: 1709 VSCASGCTAVETKSKPYKFHCMEKNEAAMKL 1739


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 299 KGYCSQSLIYEEASDCPEGNDC 364
           KG+  +S+       C  GN+C
Sbjct: 5   KGFFRRSITKNAVYQCKYGNNC 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,792
Number of Sequences: 438
Number of extensions: 2439
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)