Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13c14
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 27 2.9
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 3.8
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 26 5.1
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 6.7
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 6.7
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 25 6.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 8.9
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 8.9
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 25 8.9
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 25 8.9
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 25 8.9
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/61 (24%), Positives = 33/61 (54%)
Frame = +1
Query: 379 LITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAFNTSSLRDVYHVMEALFNCC 558
++ S+F+V ++A +I VF +S +TS +++ + ++ Y++ +AL C
Sbjct: 237 VLCVSLFLVNIIADRILYGRFVFPIISFFQFNVTSGLSSLYGLNAWH--YYLSQALPLIC 294
Query: 559 G 561
G
Sbjct: 295 G 295
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 236 TPRRIIARPANSDRRMLGSKSSSFGSVLVNCRDCGSEKTRLAMKSTYLAINSG 78
T R+ + R ANS LGS S G N ++ S L K+ + IN+G
Sbjct: 196 TARKPVPRRANSASHNLGSTKSPNG----NAKESLSRSAELPSKAKPMEINNG 244
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 214 LAIIRLGVAVLRNLRDLQDILPVNAL 291
+ I + VA+++ DLQD LP+ AL
Sbjct: 661 IPIFKCHVAIVQYFHDLQDYLPIVAL 686
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 6.7
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 477 YCAGDVGQKTEYH 439
+C GD G+KT++H
Sbjct: 741 FCTGDFGEKTDWH 753
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 462 VGQKTEYHDSQVDLHGH 412
+G K+ YH S VD+H H
Sbjct: 153 IGWKSIYHASDVDVHDH 169
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 460 DVTSTITSWVTTAFNTSSLRDVYHVMEALF 549
++ S+ SW + N+ L+D+Y + E LF
Sbjct: 277 EIGSSTWSWPSQNCNSVLLKDIYKLQEILF 306
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/65 (23%), Positives = 32/65 (49%)
Frame = +3
Query: 366 IKMYADNLLHIHGDTGGREDLPGYRGIRFSVRRHQHNNQLGDHSVQHEQLKRRISRHGSS 545
+K+Y H G + G +G++ +V + + ++ +H E ++R I G++
Sbjct: 1122 LKLYQQMKKHGMLFVDGEKGKTGIKGLQNTVMQLK---KICNHPFIFEDVERAIDPSGTN 1178
Query: 546 IQLLW 560
+ LLW
Sbjct: 1179 VDLLW 1183
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 367 SRCMLITYSIFMVILVAVKIYL 432
S C+L YS+F+ +LV +K+ L
Sbjct: 382 SDCLLDNYSLFVDLLVTLKVSL 403
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 145 QFTSTDPNDEDLEPSILLSELAGLAI 222
+ TS D +DEDL + LSE L +
Sbjct: 19 RLTSRDTDDEDLSGIVQLSEAVNLTV 44
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 175 DLEPSILLSELAGLAIIRLGVAVLRNLRDLQDILPVN 285
D S+LL E GLA+ +L + ++ +LP+N
Sbjct: 121 DFISSVLLEENQGLALHQLTLKLINIGESFHSLLPIN 157
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 388 YSIFMVILVAVKIYLAIVVFGFLSDVTST 474
+ +FM+I+ + +L I +F + D TST
Sbjct: 246 WKLFMIIVGGITFFLTIGLFFYYPDNTST 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,144
Number of Sequences: 5004
Number of extensions: 54735
Number of successful extensions: 167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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