Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13c10
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    88   9e-19
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   7.5  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.9  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.9  

>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 88.2 bits (209), Expect = 9e-19
 Identities = 43/98 (43%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
 Frame = +3

Query: 381 RTMFIQTQDTPNPNSLKFLPGTKVLEPG-QTLDFPNIGAAHCSPLAKMLFRIDGVKAVFF 557
           R+++I++++TPN N+LKFLPG  +L P   + +F        SPLA+ LF IDGV ++FF
Sbjct: 41  RSIWIRSEETPNENALKFLPGLDILPPTIGSCEFMRGQGTVNSPLAQKLFDIDGVDSIFF 100

Query: 558 GPEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVV 671
           G +FITV+K     +W  +KPE+F  IM+  ++G PV+
Sbjct: 101 GKDFITVSK-GAGTEWAQMKPEVFSVIMEHLSNGSPVL 137


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 278  IRINFTKADKKVPWTIRYFKV*HSTKESSSFCMLPY 385
            + +  T+  K VPW +R  K+    K     C++ Y
Sbjct: 920  LSLRLTERKKFVPWILRGLKLASEGKPLEDLCLVQY 955


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
 Frame = +3

Query: 381 RTMFIQTQDTPNPNSLKFLPGTKVLEPGQ---TLDFPNI--GAAHCSPLAKMLFRIDGV 542
           RT    T   PNPN+    P   +   GQ       PN+  GAA   P +   F + G+
Sbjct: 84  RTANPNTNSNPNPNATNAQPNPTMFSTGQFSTEQGLPNVFFGAAAAQPGSGTPFVMPGI 142


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 546 AVFFGPEFITVTKQDDDVDWKLLKPEIFGTI 638
           AVF  P+ ++V K  +D    LLK ++ G++
Sbjct: 470 AVFKSPDIVSVKKTLEDARSHLLKDDLDGSV 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,705
Number of Sequences: 5004
Number of extensions: 50913
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)