Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13b23
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    28   0.44 
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   1.8  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    25   5.4  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    24   7.1  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    24   7.1  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    24   9.4  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    24   9.4  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    24   9.4  

>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 179 RVRRHTSHYERAIRVYITPTTKTIRASCCRNSQPLEILY 295
           ++R+  S Y +  RVY+TP +   RA   RN     ++Y
Sbjct: 137 KLRQILSQYGKIGRVYLTPESSAKRAQRLRNGGNKRVMY 175


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 154 RKVNEPRVQSTTPHVALRESD*GLYNSNDENDSS 255
           R VN+PR   + PH+A  + D  +  S+++N+++
Sbjct: 661 RSVNDPRRVLSLPHMASADEDHRIPASDNQNNNN 694


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 3   VGKPPGRAPHDRNLRERRAVPTNINFSEIKHASAY 107
           VG+  G+ PHD+++R    +     F  ++H S Y
Sbjct: 294 VGRAHGKTPHDQSIR----LEDEFRFMLVRHWSLY 324


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 105 YRCNVKCERKIL*IKYEKSERASSAEYD 188
           Y C+ KC  K++     KS  ++S+EY+
Sbjct: 439 YTCHKKCYPKVVTKCISKSSDSASSEYE 466


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 266 YSTKLESFSSLELYKP 219
           Y  +LE+F +L +YKP
Sbjct: 588 YQQRLETFETLRIYKP 603


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 296 YTIFRGAESFYSTKLESFSSLELYKP 219
           Y  F   ES Y    +SFS L LY P
Sbjct: 128 YLDFTSLESRYFQVHDSFSGLRLYHP 153


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 283 EGLRVSTARSSNRFRRWSYINPNRSLVVRR 194
           EG+     + SN   + S I+ NRS+ +RR
Sbjct: 327 EGMAFQLHKKSNSILKSSNIDHNRSMPIRR 356


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 259 RSSNRFRRWSYINPNRSLVVRRVASYSALEARSLF 155
           R  NR    +Y+  NRSL+    +SY+A    +++
Sbjct: 80  RGENRACPNAYMKYNRSLIYHGYSSYTASSCTAIY 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,490,266
Number of Sequences: 5004
Number of extensions: 27370
Number of successful extensions: 62
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)