Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13b23
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0022 - 27103367-27103533,27103783-27103852,27104074-271042... 28 2.2
10_08_0299 - 16607152-16607322,16607465-16607785,16607870-166081... 28 2.9
12_01_0914 + 8901915-8902574 27 3.8
06_03_1377 - 29692895-29692899,29700435-29702190 27 3.8
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561 27 5.1
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686... 27 5.1
10_08_0269 - 16366392-16366403,16366469-16368262 27 6.7
06_03_0672 + 23359510-23361253,23389969-23390203,23392078-233922... 27 6.7
03_03_0116 - 14572258-14572881,14573026-14573127,14573253-145733... 27 6.7
12_02_0034 - 12539201-12540439 26 8.9
07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113... 26 8.9
>05_07_0022 -
27103367-27103533,27103783-27103852,27104074-27104215,
27104372-27104552,27104654-27104756
Length = 220
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 183 TLHSRLVHFSRI*FTESCARILR 115
TLHS++ HFS + + SC + LR
Sbjct: 116 TLHSKVAHFSAVLYDISCGKELR 138
>10_08_0299 -
16607152-16607322,16607465-16607785,16607870-16608121,
16608298-16608435,16608544-16608651,16608814-16609014,
16609109-16609233,16609252-16609321,16609919-16610455
Length = 640
Score = 27.9 bits (59), Expect = 2.9
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -2
Query: 263 STKLESFSSLELYKP*---SLSRSATCGVVLCTRGSFTFLVFDSQNLALAFYV 114
++KL+SF LE ++ SLS S T LC GS ++D L L ++
Sbjct: 205 NSKLQSFRQLEPFEGHQVRSLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFI 257
>12_01_0914 + 8901915-8902574
Length = 219
Score = 27.5 bits (58), Expect = 3.8
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 69 NINFSEIKHASAYRCNVKCERKIL*IKYEKSERASSA--EYDATRRTTRERLGFI*LQRR 242
NI +++K A +++ +KIL +K E + D +R T LG I
Sbjct: 55 NIIINDLKGLGATYTDLEVAQKILRALPDKHETLVTILINSDMSRMTPTSLLGKINTNDM 114
Query: 243 KRFELRAVETLSPSKYCI 296
+ + + +E SPSK C+
Sbjct: 115 YKLKKKEMEEASPSKKCV 132
>06_03_1377 - 29692895-29692899,29700435-29702190
Length = 586
Score = 27.5 bits (58), Expect = 3.8
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 69 NINFSEIKHASAYRCNVKCERKIL*IKYEKSERASSA--EYDATRRTTRERLGFI*LQRR 242
N+ +++K A +++ +K+L EK E + D +R T LG I
Sbjct: 136 NVIVNDLKRLGANYTDLEVAQKMLRALPEKYETLVTMLINSDMSRMTPASLLGKINTNDM 195
Query: 243 KRFELRAVETLSPSKYCI 296
+ + + +E SPSK CI
Sbjct: 196 YKLKKKEMEEASPSKKCI 213
>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
Length = 495
Score = 27.1 bits (57), Expect = 5.1
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 69 NINFSEIKHASAYRCNVKCERKIL*IKYEKSERASSA--EYDATRRTTRERLGFI*LQRR 242
N+ +++K A +++ +K+L EK E + D +R T LG I
Sbjct: 124 NVIVNDLKGLGATYTDLEVAQKMLRALPEKYETLVTMLINSDMSRMTPASLLGKINTNDM 183
Query: 243 KRFELRAVETLSPSKYCI 296
+ + + +E SPSK CI
Sbjct: 184 YKLKKKEMEEASPSKQCI 201
>03_05_0026 +
19966616-19966703,19967992-19968058,19968599-19968677,
19969140-19969231,19969961-19970396,19973749-19974099
Length = 370
Score = 27.1 bits (57), Expect = 5.1
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 69 NINFSEIKHASAYRCNVKCERKIL*IKYEKSERASSA--EYDATRRTTRERLGFI*LQRR 242
N+ +++K A +++ +K+L EK E + D +R T LG I
Sbjct: 164 NVIVNDLKGLGATYTDLEVAQKMLRSLQEKYETLVTMLINSDMSRMTPASLLGKINTNDM 223
Query: 243 KRFELRAVETLSPSKYCI 296
+ + + +E SPSK CI
Sbjct: 224 YKLKKKEMEEASPSKKCI 241
>10_08_0269 - 16366392-16366403,16366469-16368262
Length = 601
Score = 26.6 bits (56), Expect = 6.7
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 69 NINFSEIKHASAYRCNVKCERKIL*IKYEKSERASSA--EYDATRRTTRERLGFI*LQRR 242
N+ +++K A +++ +K+L EK E + D +R T LG I
Sbjct: 136 NVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTMLINSDMSRMTPASLLGKINTNDM 195
Query: 243 KRFELRAVETLSPSKYCI 296
+ + + +E SPSK CI
Sbjct: 196 YKLKKKEMEEASPSKKCI 213
>06_03_0672 +
23359510-23361253,23389969-23390203,23392078-23392234,
23392535-23392597
Length = 732
Score = 26.6 bits (56), Expect = 6.7
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 69 NINFSEIKHASAYRCNVKCERKIL*IKYEKSERASSA--EYDATRRTTRERLGFI*LQRR 242
N+ +++K A +++ +K+L EK E + D +R T LG I
Sbjct: 136 NVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTMLINSDMSRMTPASLLGKINTNDM 195
Query: 243 KRFELRAVETLSPSKYCI 296
+ + + +E SPSK CI
Sbjct: 196 YKLKKKEMEEASPSKKCI 213
>03_03_0116 -
14572258-14572881,14573026-14573127,14573253-14573345,
14573445-14573591,14573690-14573780,14573873-14573961,
14574061-14574126,14574241-14574762
Length = 577
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 91 NTHPRTAVT*NASARFCESNTRKVNEPRVQSTTPHVALRES 213
N PR+A +AS+RF R N + TP ALR S
Sbjct: 524 NLSPRSAAAASASSRFSSPQRRSFNGAAAPA-TPREALRPS 563
>12_02_0034 - 12539201-12540439
Length = 412
Score = 26.2 bits (55), Expect = 8.9
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 69 NINFSEIKHASAYRCNVKCERKIL*IKYEKSERASSA--EYDATRRTTRERLGFI*LQRR 242
N+ +++K A +++ +K+L EK E + D +R T LG I
Sbjct: 136 NVIGNDLKGLGATYTDLEVAQKMLRAPPEKYETLVTMLINSDMSRMTPASLLGKINTNDI 195
Query: 243 KRFELRAVETLSPSKYCI 296
+ + + +E +SPSK CI
Sbjct: 196 YKLKKKEMEEVSPSKKCI 213
>07_03_1732 +
29109612-29110623,29110712-29110786,29111176-29111333,
29111714-29111937,29112136-29112745
Length = 692
Score = 26.2 bits (55), Expect = 8.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 74 YIRWHRSSLAQIPVVWRPPG 15
Y+ WHRS +Q+ + PPG
Sbjct: 371 YLTWHRSVSSQLSLSRNPPG 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,848,851
Number of Sequences: 37544
Number of extensions: 176458
Number of successful extensions: 473
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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