Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13b23
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical pr...    31   0.37 
Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U13072-3|AAK31396.4|  326|Caenorhabditis elegans Serpentine rece...    27   3.4  
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U39676-1|AAB37030.1|  186|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonin...    27   4.5  

>U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical
           protein C01B10.3 protein.
          Length = 402

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 341 SSAVMCQCLAVTERFYTIFRGAESFYSTKLESFSSLELYK 222
           ++ V+C C+      Y  F  + +F+ TKL    +L L+K
Sbjct: 59  AARVICGCITDNPEIYRAFDSSMAFFDTKLTGLGNLYLFK 98


>Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.6 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 164 FTFLVFDSQNLALAFYVTAVRGCVFYFTEIY 72
           + FLVFD+    L F +T  R    YF   Y
Sbjct: 86  YPFLVFDTMRYTLGFLITFDRFIAIYFPVFY 116


>U13072-3|AAK31396.4|  326|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 3 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 188 VVLCTRGSFTFLVFDSQNLALAFYVTAVRGCVFYF 84
           V L  R    FL+F+S    L FY  ++  C  YF
Sbjct: 69  VQLTARSIQIFLIFNSAEDGLVFYYASLARCTCYF 103


>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
           protein H39E23.1a protein.
          Length = 1192

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 9   KPPGRAPHDRNLRERRAVPTNINFSEIKH 95
           +PPG+ PH  N   R++  + +  + +KH
Sbjct: 40  QPPGQIPHSTNSGTRKSSGSGLKTANLKH 68


>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
           protein H39E23.1a protein.
          Length = 1192

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 9   KPPGRAPHDRNLRERRAVPTNINFSEIKH 95
           +PPG+ PH  N   R++  + +  + +KH
Sbjct: 40  QPPGQIPHSTNSGTRKSSGSGLKTANLKH 68


>U39676-1|AAB37030.1|  186|Caenorhabditis elegans Hypothetical
           protein C23F12.4 protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 139 CESNTRKVNEPRVQSTTPHVALRESD*GLYNSNDENDSSFVL 264
           CE +     +PR +S T  V LR+    L  ++D+N+ +FVL
Sbjct: 33  CEQHG-STEDPRKESITARVFLRKRMKELPETDDKNNKAFVL 73


>U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 1192

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 9   KPPGRAPHDRNLRERRAVPTNINFSEIKH 95
           +PPG+ PH  N   R++  + +  + +KH
Sbjct: 40  QPPGQIPHSTNSGTRKSSGSGLKTANLKH 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,478,732
Number of Sequences: 27780
Number of extensions: 157541
Number of successful extensions: 442
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)