Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13b21
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 167 7e-42
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 167 7e-42
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 142 2e-34
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 37 0.017
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 36 0.040
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 32 0.49
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 32 0.49
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 31 0.65
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 31 0.65
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.86
07_03_1414 - 26403361-26403969 29 3.5
12_02_0917 + 24281029-24281137,24281998-24282095,24282196-242823... 28 6.0
01_01_1079 - 8491955-8492755 28 6.0
07_03_1422 + 26462871-26463434,26463772-26463897 28 8.0
07_03_1413 - 26396426-26396890 28 8.0
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 8.0
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 167 bits (406), Expect = 7e-42
Identities = 82/148 (55%), Positives = 100/148 (67%)
Frame = +2
Query: 188 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 367
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 368 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 547
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 82 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 140
Query: 548 KKKAQLVVIAHDVDPIELVLFLPALCRK 631
+ KAQLVVIAHDVDPIELV++LPALCRK
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRK 168
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +3
Query: 630 KMGVPYCIVKGKSRLGALV 686
KM VPYCIVKGK+RLG++V
Sbjct: 168 KMEVPYCIVKGKARLGSIV 186
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 167 bits (406), Expect = 7e-42
Identities = 82/148 (55%), Positives = 100/148 (67%)
Frame = +2
Query: 188 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 367
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 368 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 547
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 66 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 124
Query: 548 KKKAQLVVIAHDVDPIELVLFLPALCRK 631
+ KAQLVVIAHDVDPIELV++LPALCRK
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCRK 152
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 142 bits (344), Expect = 2e-34
Identities = 75/148 (50%), Positives = 96/148 (64%)
Frame = +2
Query: 188 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 367
NPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82
Query: 368 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 547
K ++L++ + E +P ++ G + VT L+E
Sbjct: 83 KNLGCQKERLLKRAQAEA-----------------EGKTVEAKKPIVVKYGLDHVTYLIE 125
Query: 548 KKKAQLVVIAHDVDPIELVLFLPALCRK 631
+ KAQLVVIAHDVDPIELV++LPALCRK
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRK 153
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +3
Query: 630 KMGVPYCIVKGKSRLGALV 686
KM +PYCIVKGK+RLG++V
Sbjct: 153 KMEIPYCIVKGKARLGSIV 171
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 509 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAL 622
++ G N TK + + A+ VV+A D +P+E++L LP L
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLL 70
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 35.5 bits (78), Expect = 0.040
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 509 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAL 622
++ G N TK + + ++ VV+A D +P+E++L LP L
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLL 72
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 518 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKN 634
G K +EK AQL V+A D D + V + ALC ++
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEH 79
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 518 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKN 634
G K +EK AQL V+A D D + V + ALC ++
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEH 79
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 31.5 bits (68), Expect = 0.65
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 509 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRK 631
++ G V K + + + L +IA ++ PI+++ +P LC +
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEE 85
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 31.5 bits (68), Expect = 0.65
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 509 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRK 631
++ G V K + + L VIA ++ PI+++ +P LC +
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEE 85
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 286 PHPAPEGCTSASSESAPSDQP 348
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>07_03_1414 - 26403361-26403969
Length = 202
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 298 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 158
AL A + P + G++ + + +T + L P LEE + GL L+D
Sbjct: 76 ALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>12_02_0917 +
24281029-24281137,24281998-24282095,24282196-24282372,
24282490-24282590,24282684-24282759,24282843-24282902,
24282999-24283195,24283296-24283392,24283478-24283564,
24283925-24283983,24284535-24284626,24284706-24284783,
24284891-24285051,24285303-24285530
Length = 539
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 685 TSAPRRDLPLTMQYGTPIFTA 623
+SAP +P Q+GTPIFTA
Sbjct: 269 SSAPWIKIPYPFQWGTPIFTA 289
>01_01_1079 - 8491955-8492755
Length = 266
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 581 DVDPIELVLFLPALCRKNGCTILHCQGQVP 670
D + + ++L LP L R + +HC G+VP
Sbjct: 192 DGEVVAVLLLLPVLRRSSPTACVHCGGEVP 221
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 298 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 158
AL + P Y G+V + + +T + L P LEE GL L D
Sbjct: 74 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1413 - 26396426-26396890
Length = 154
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 298 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 158
AL + P Y G+V + + +T + L P LEE GL L D
Sbjct: 28 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 233 PDQ*QSSLASSRREDSRSSWAQPF*PPMGRR 141
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,514,964
Number of Sequences: 37544
Number of extensions: 323891
Number of successful extensions: 1040
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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