Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13b18
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    29   0.040
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.0  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   8.0  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   8.0  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   8.0  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   8.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.0  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 29.1 bits (62), Expect = 0.040
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 210 SMPVCVPYLYVLITGTSGHSLPVEVVRDI 124
           ++PVC P L+V    TS H   +E+  DI
Sbjct: 147 TVPVCAPKLHVFDLKTSNHLKQIEIPHDI 175


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 211 GWRMTASWKA 240
           GW +T SWKA
Sbjct: 97  GWAITVSWKA 106


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 61  FHSLLL*TNSVFS-VTLIPI 5
           FHS+L  TN++F  VT+ PI
Sbjct: 258 FHSILNRTNNIFELVTVEPI 277


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 144 VEVVRDIVNKVFVIGMYRLG 85
           VEV RDI+N   VI + R G
Sbjct: 148 VEVKRDIINPEDVIPIRRTG 167


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 144 VEVVRDIVNKVFVIGMYRLG 85
           VEV RDI+N   VI + R G
Sbjct: 137 VEVKRDIINPEDVIVIRRTG 156


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 144 VEVVRDIVNKVFVIGMYRLG 85
           VEV RDI+N   VI + R G
Sbjct: 148 VEVKRDIINPEDVIVIRRTG 167


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 144 VEVVRDIVNKVFVIGMYRLG 85
           VEV RDI+N   VI + R G
Sbjct: 148 VEVKRDIINPEDVIVIRRTG 167


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 144 VEVVRDIVNKVFVIGMYRLG 85
           VEV RDI+N   VI + R G
Sbjct: 137 VEVKRDIINPEDVIVIRRTG 156


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -3

Query: 644 SSLPTANIGGFPTLDNEGFHDKQLIETFVGISCWRVH 534
           SS  TA  G     D    HD+ +I    G+   +VH
Sbjct: 241 SSTRTAETGTIRKCDESSPHDQVIIGGSNGLDTSKVH 277


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 157 ATCSSDQYVKIWDTDGHGGWRMTASWKAHHGS 252
           A C +++ +KIW  +    W+     K   GS
Sbjct: 306 ALCLTERQIKIWFQNRRMKWKKENKSKGTPGS 337


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 308 PLIEQLLFGRKWVTPQQQAL 367
           P+++  +FG+  V+P   AL
Sbjct: 848 PIVQSGIFGKYMVSPSNDAL 867


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,269
Number of Sequences: 438
Number of extensions: 5252
Number of successful extensions: 35
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)