Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13b14
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   1.9  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.3  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   7.7  
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    25   7.7  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    25   7.7  

>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = +1

Query: 415 LVVSENYDSISNFLTHYDAYMASPID-----TLKEFYQKYNPPIR 534
           ++VSEN  + SN L+ Y+A  AS  D      L+ +   Y PPIR
Sbjct: 188 ILVSENATAGSNSLSSYNACPASDADDFTTPALEAWRNVYMPPIR 232


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 543 FVGADRRVIFLVKFFQGVDRGSHVSVVVRQEVANGIIVFGN 421
           F G   +      FFQG+  G+H++   R  V   + VFG+
Sbjct: 336 FQGGVSQFFLYSVFFQGLWFGNHLATTKRVNVGQVVTVFGS 376


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 439 SISNFLTHYDAYMASPIDTLKEFY 510
           SISN +  +D YMA  +    EF+
Sbjct: 428 SISNIIRMWDTYMAEGVQGFSEFH 451


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 385 VAKAEV-LLSRLVVSENYDSISNFLTHY 465
           V K E+  L++ +V +    ISNFLTHY
Sbjct: 41  VPKIEMNFLNKPIVPDTTKVISNFLTHY 68


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = -3

Query: 435 IVFGNHETTQQYLGFGDQLLVLTESEVQSRTGCPPARRRQGVVGRPATGIILVPG 271
           ++ G ++  +       + L+ +++E+Q       A R +  + RPA+  IL PG
Sbjct: 209 LLIGENQDAENTADTSKRGLLTSQTEIQFFKAAHSALRLKASMTRPASNAILQPG 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.131    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,868
Number of Sequences: 5004
Number of extensions: 43884
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)