Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13b13
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   1.3  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    24   7.1  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    24   9.4  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    24   9.4  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    24   9.4  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    24   9.4  

>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 130 NFQDYLLFLFNSICLTAVEIIHQYLSTY 213
           NF+  L   F SIC+  + + ++YL+ Y
Sbjct: 63  NFKSLLFLFFVSICVVILVVRYRYLNKY 90


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 202 GIDELFQQQLNILN*IGIVGNPENSKGHTHNPNHSQILSVLSM 74
           G + L  QQ ++LN     G P N+  +  +PN SQ  S  SM
Sbjct: 175 GANSLKAQQ-DLLN--SFTGAPSNNSHNIPDPNLSQTFSATSM 214


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 151 IVGNPENSKGHTHNP 107
           +VGN ENSK   +NP
Sbjct: 591 VVGNTENSKDEFNNP 605


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 193 ELFQQQLNILN*IGIVGNPENSKGHTHNPNHSQ 95
           +L   +   L+ +  + N +++   TH PNHS+
Sbjct: 240 QLLSCRFTTLSKLAPINNSKSAPKGTHKPNHSE 272


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 103 DLDCVCDLSNFQDYLLFLFNSICLTAVEIIHQYLSTYP 216
           D   +C +  +   +    N  CLTA   I  +++T+P
Sbjct: 595 DAKTICLIERYIRLISQRANGQCLTAASWIRNFITTHP 632


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 270 HPAMNSATPAVPQVPLLDDDTIA 338
           HP +++ +P  P VP+  D  +A
Sbjct: 287 HPPVSNLSPRTPAVPMSSDGHLA 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,538,445
Number of Sequences: 5004
Number of extensions: 29043
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)