Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13b13
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1203 - 34934635-34934749,34934865-34934923,34935019-349351...    27   5.1  
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535...    27   6.7  
03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477     27   6.7  

>02_05_1203 -
           34934635-34934749,34934865-34934923,34935019-34935120,
           34935254-34935333,34935474-34935558,34935641-34935724,
           34935842-34935927,34936053-34936135,34936226-34936479
          Length = 315

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 232 ILNECQDR*IGIDELFQQQLN 170
           ILNEC+D  I +DE+   Q++
Sbjct: 253 ILNECRDNIISVDEIVPNQIS 273


>04_04_1122 +
           31052497-31052629,31053133-31053191,31053285-31053579,
           31054099-31054279,31054739-31054956,31055522-31055739,
           31055842-31055958,31056106-31056128,31056223-31056438,
           31056536-31056677,31056822-31057067,31057659-31057856,
           31058331-31058379,31060835-31060911,31061266-31061551,
           31061661-31061841,31062149-31062344,31062630-31062738,
           31062861-31062961,31063155-31063267,31063347-31063442,
           31063531-31063746,31063857-31063995,31064087-31064332,
           31064605-31064940
          Length = 1396

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 121 DLSNFQDYLLFLFNSICLTAVEIIHQY 201
           ++ NFQ     LFNS+ +TA  ++H Y
Sbjct: 251 EVMNFQRKNGSLFNSLSITAAVLVHNY 277


>03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477
          Length = 486

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 261 LMNHPAMNSATPAVPQVPLLDDDTIAFGEED 353
           L+NH A  S TP  P+VP ++    +  +ED
Sbjct: 295 LVNHLARKSGTPLRPKVPPIETYLFSLLDED 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,843,638
Number of Sequences: 37544
Number of extensions: 150077
Number of successful extensions: 307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)