Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13b11
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    29   0.76 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   1.3  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    27   2.3  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   2.3  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    26   4.0  
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   9.3  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   9.3  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   9.3  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    25   9.3  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 638 CLSPFANFISMFTSFGLCTP 579
           CL+ + NF+S+ T FGL TP
Sbjct: 520 CLNSYVNFVSVCTLFGLETP 539


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 458 LISELSFESVSLYHKVFVQVFVCIEQFQILQNWLEQVSLHI 336
           L S L  +SVS+YHKV  +V+      QI++N  +  S+ I
Sbjct: 696 LPSNLGGKSVSIYHKVIKKVYGKEHAQQIIENLQKNPSVTI 736


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 401 PAQRPCDTVTHFQKIAPKLEPVGIHGFLTRADS 499
           PAQ+ CD  T  + + P L  +   G + R DS
Sbjct: 261 PAQQKCDGSTFLKSLVPSLLSLDTEGRVLRLDS 293


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 162 VLTHIFVAILTCDFGHTN-*DFLKW*KCWKLQVNH*LLKSKQNRKRVQLKLLLYHLFRSN 338
           VL  +  AILTC +G T+  D +    C  +Q +  ++  +     + + + LYH F   
Sbjct: 767 VLLTLGSAILTCPYGQTDIIDKVLIDMCSSIQNSVVIINEESFMNNIDITVELYHFFSII 826

Query: 339 VQRY 350
           +Q++
Sbjct: 827 LQKH 830


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 434 SVSLYHKVFVQVFVCIEQFQILQNWLEQVSLH 339
           ++ LY  +F +   C E  Q+   W+E V+ H
Sbjct: 56  NLELYQSLFEEFQDCFENEQLDVEWVESVTFH 87


>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 371 RFGIVQYKQKPAQRPCDTV-THFQKIAPKLEPVGIHGFLTRADSDLGHKY 517
           ++G   YK    + P   +  HF  + P L+  G+ G+L     DL  +Y
Sbjct: 130 QYGAALYKTGLLKNPKGFIHIHFVCVDPALQGNGVGGYLLDMAHDLADEY 179


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 316 SNNFNWTLFRFCFDLSNQWFTCSFQ 242
           S NF+WT FR  F     + +C  Q
Sbjct: 256 SPNFDWTQFRKAFKDPKMYMSCVIQ 280


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 237 KCWKLQVNH*LLKSKQNRKRVQLKLLLYHLFRSN 338
           K  K+  NH L KS ++   V  K L   LFRSN
Sbjct: 103 KSLKVIANHQLTKSSKSLSNVSNKPLGDQLFRSN 136


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 428 SLYHKVFVQVFVCIEQFQILQNWLEQV 348
           +L H +F       E F I Q W EQV
Sbjct: 197 NLDHSLFAPYDDAFENFYIYQEWFEQV 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,606
Number of Sequences: 5004
Number of extensions: 58361
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)