Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13b11
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0062 - 20614443-20615037,20615720-20615842,20617967-20618229 29 2.4
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 29 4.2
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 28 5.5
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 28 5.5
06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026 28 7.3
08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965 27 9.7
06_01_0828 + 6250860-6250992,6251082-6251211,6251284-6251989 27 9.7
06_01_0245 - 1849156-1849197,1849300-1849341,1849564-1849605,184... 27 9.7
04_04_0604 - 26546363-26548363 27 9.7
>09_06_0062 - 20614443-20615037,20615720-20615842,20617967-20618229
Length = 326
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 448 SYLLKVCHCITRSLCRFLFVLNNSKSCKTGWNRYL 344
S++L HC R++ + +L KSC+ W YL
Sbjct: 27 SFILTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
>08_01_0033 +
244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 316 CITCSGQMCKDTCSSQFCKI 375
CIT G +CK C +FC+I
Sbjct: 750 CITKQGDICKTFCRIRFCRI 769
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -3
Query: 619 TLSACLRLLVCVLHYRFIIGIVSFTRRVGHSSSSIFMAEIRVSSSQETMNSN 464
+LS CL LVC +H+ I +++F ++ S + E ++ + N N
Sbjct: 638 SLSVCLAPLVCWVHFHTIYMLLNFISKI---ESDVLHGEDKIHRKNDEKNVN 686
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 448 SYLLKVCHCITRSLCRFLFVLNNSKSCKTGWNRYL 344
++LL HC R + + +L KSC+ W YL
Sbjct: 1714 TFLLSNGHCCWRLVPKLAGLLRCGKSCRLRWTNYL 1748
>06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026
Length = 267
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 448 SYLLKVCHCITRSLCRFLFVLNNSKSCKTGWNRYL 344
++LL HC R + + +L KSC+ W YL
Sbjct: 27 AFLLTHGHCCWRVVPKLAGLLRCGKSCRLRWTNYL 61
>08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965
Length = 357
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = -3
Query: 445 YLLKVCHCITRSLCRFLFVLNNSKSCKTGWNRYLCTFDRNR*YSNNFNWTLFRFCFDLSN 266
Y+ K H R+L R + KSC+ W YL + +S T+ L N
Sbjct: 28 YIQKNGHGSWRTLPRLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGN 87
Query: 265 QW 260
+W
Sbjct: 88 KW 89
>06_01_0828 + 6250860-6250992,6251082-6251211,6251284-6251989
Length = 322
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = -3
Query: 448 SYLLKVCHCITRSLCRFLFVLNNSKSCKTGWNRYLCTFDRNR*YSNNFNWTLFRFCFDLS 269
SY+ K H R L + KSC+ W YL + +S T+ + L
Sbjct: 27 SYIQKHGHASWRVLPELAGLNRCGKSCRLRWTNYLKPDIKRGNFSREEEQTILQLHSILG 86
Query: 268 NQW 260
N+W
Sbjct: 87 NKW 89
>06_01_0245 -
1849156-1849197,1849300-1849341,1849564-1849605,
1849697-1849824,1850078-1850285,1850381-1850561,
1851761-1852114,1852577-1852803
Length = 407
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 524 VFDIYGRDQSQLESRNHEFQQVLISELSFES 432
+ D+Y DQ+ LE ++E ++V+ E FES
Sbjct: 242 ILDMYNDDQNFLEDLSYELKEVVSFEPIFES 272
>04_04_0604 - 26546363-26548363
Length = 666
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 146 IGYSFGSNPYFCRHFDL*FWSYELRLPQVVKVLETTSKPLIAQIEAEPKESPVKIV 313
+G+S + FCRH+ L WS+++ L +S P + +P+ ++IV
Sbjct: 239 VGFSSATGILFCRHYVL-GWSFKMN--GAAPALNISSLPSLPVTFPKPRSKTLEIV 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,779,320
Number of Sequences: 37544
Number of extensions: 336296
Number of successful extensions: 788
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -