Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13b11
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   7.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -2

Query: 623 ANFISMFTSFGLCTPLQVHYRDRVVYATRGTFFVFDIYGRDQS 495
           +++   F +   C+P  VH    +  + R +  + D+YG ++S
Sbjct: 352 SDYQDAFCNIVSCSPQTVHPETIIDVSRRRSSLICDVYGVNES 394


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 419 HKVFVQVFVCIEQFQILQNWLEQ 351
           HK  ++     E++ ILQNW+++
Sbjct: 55  HKYGLRFEEVSEKYGILQNWMDK 77


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 439 LKVCHCITRSLCRFLFVLNNSKSCKTGWNRYL 344
           L +   + R +  +LF L  + +   GWNRY+
Sbjct: 163 LSINGALIRIIAIWLFSLGWTIAPMFGWNRYV 194


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 439 LKVCHCITRSLCRFLFVLNNSKSCKTGWNRYL 344
           L +   + R +  +LF L  + +   GWNRY+
Sbjct: 39  LSINGALIRIIAIWLFSLGWTIAPMFGWNRYV 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,442
Number of Sequences: 438
Number of extensions: 3663
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)