Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13b07
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    38   0.001
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    37   0.002
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.2  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   5.2  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.2  
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    26   5.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.8  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    25   6.8  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   9.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   9.0  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   9.0  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 19/60 (31%), Positives = 36/60 (60%)
 Frame = +2

Query: 260 NTSSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIGLICGHVIHILVKTSQQL 439
           N S+  A+  LLK+ +G+GVL +P AFK  GL+      +++G++      +L++T  ++
Sbjct: 274 NASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHICFLLLIQTRMKV 333


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 218 MGPYVPANHRPMESNTSS---FGALAHLLKASLGSGVLAMPLAFKNAGLLVGCI 370
           M  Y P +  P + +      F ++ +L    LG+G+L++P AF   GLL GC+
Sbjct: 1   MSGYSPLSSGPADVHIGKAGFFSSVINLANTILGAGILSLPNAFTKTGLLFGCL 54


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 16  TRTIECKVPMKNKPQENIKIFGISNSFNLLLDIEDGEDEAISS 144
           T+ ++ ++  KN  +  I     +   ++LL +ED  +EAI S
Sbjct: 6   TKELKDEIYQKNYTEHEILQNAYNGKLDILLPVEDASEEAIRS 48


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 581 LPYE*QPTTSPLVLWQSM 528
           LPY   PT+ P+V W S+
Sbjct: 280 LPYNPHPTSKPVVSWDSL 297


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 488 IVFQNGPKPIRKFASIARELVDWS 559
           I+ Q+G   ++KF  + RELV++S
Sbjct: 740 IMLQSGDMRVKKFLELIRELVEFS 763


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 341 KNAGLLVGCIGTMLIGLICGHVIHILVKTSQQLCVEV 451
           +NA LL+      L+GLICG  ++        LC+ V
Sbjct: 561 RNAKLLIAFTILFLVGLICGWRLNRFTMFIYYLCILV 597


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 125 KTKPSAPPIQLVMDDNYSSKIELAYNGSREDMGPYVPANH 244
           + K  + P+   + D+  SKI+L   G  +DM P +  +H
Sbjct: 178 QNKKRSQPVSQEVRDSILSKIQLEIEGLGKDMKPPIVNSH 217


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 290  LLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIG 388
            +LKAS+ S +L   + F N+   + C+G ++ G
Sbjct: 3560 VLKASVNSALLTSWICFLNSIGAINCVGIVVSG 3592


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 488 IVFQNGPKPIRKFASIARELVDWS 559
           ++F+ G K I+K   +  E +DW+
Sbjct: 439 VIFEAGQKAIKKLKRLMLERIDWT 462


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 300 AFSKWAKAPKLEVFDSIGRWFAGTYGPMSSRD 205
           A  KWA  P+LEV  ++ R F    GP + +D
Sbjct: 161 ALLKWA--PQLEVKQTLDRKFLELLGPKTEQD 190


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +3

Query: 210  EKTWART---CQQTIDLWSQTPRV 272
            +KTW R    CQ+ +D+W +  R+
Sbjct: 1469 KKTWVRRLKGCQRNVDVWQRMLRI 1492


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 357  RRPAFLKANGIASTPEPRDAFSKWAKAPKLEVF 259
            R+  +L+ +G +   + RD  ++W   P+L VF
Sbjct: 1468 RQYKYLRLDGSSKISQRRDMVTEWQTRPELFVF 1500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,111
Number of Sequences: 5004
Number of extensions: 64644
Number of successful extensions: 187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)